soedinglab / plass

sensitive and precise assembly of short sequencing reads

https://plass.mmseqs.com

soedinglab/plass Issues

Insights needed for comparison with other assemblers
Updated a month ago1
High level of duplicated protein sequences
Closed a month ago1
Quality trimming reads?
Updated a month ago2
Alternative codon table
Closed a month ago2
Incorrect headers for Nuc -> Protein
Updated 9 months ago7
general question to gauge dev opinion/advice on selecting proteins for gene phylogenies
Closed a year ago2
mmseqs extractorfs can tranlate orfs but CLI does not allow to specify tranlation table
Updated a year ago2
Quantification
Updated a year ago
Paired read prediction - mergereads failed
Updated 2 years ago3
Install issues
Updated 2 years ago6
Update MMseqs2 submodule
Closed 3 years ago
Use PLASS in metatranscriptomic data
Updated 3 years ago5
Issue with Docker image soedinglab/plass:latest
Closed 3 years ago2
Empty (len:0) sequences in plass output
Updated 3 years ago4
Using more stringent parameters to avoid spurious sequences
Updated 3 years ago9
Some Issues about the length of protein sequences
Updated 4 years ago2
MPI local-tmp
Updated 4 years ago1
Segmentation fault translatenucs
Closed 4 years ago2
The output file is empty
Updated 4 years ago1
Use Plass for euk metagenomics data
Updated 4 years ago2
Error running mpi job with class
Updated 4 years ago1
missing handling of small number of input reads
Updated 4 years ago7
map of input sequences to assembled sequence
Updated 4 years ago
Using already predicted ORFs from reads
Updated 4 years ago4
Final output file size 0
Updated 4 years ago2
Is it possible to read sequences from stdin or to provide multiple unpaired files at once?
Updated 4 years ago1
Defining minimum ORF length doesn't work
Closed 5 years ago1
Protein sequence abundance
Updated 5 years ago5
Recurrently getting "Kmer matching step died"
Updated 5 years ago7
Core dump during assembly
Updated 5 years ago2
Can not allocate index memory in DBReader
Closed 5 years ago6
Compilation error: zlib found but not working
Updated 5 years ago4
Assembling big data
Updated 5 years ago5
Intuitions regarding possible output and previous steps
Updated 5 years ago1
Reduce TMP disk usage
Closed 5 years ago5
Automated Docker images with sha256 tags
Closed 5 years ago4
ID collisions in FASTA output
Closed 6 years ago6
Combining single and paired reads
Closed 5 years ago2
Running plass in parallel on same 'tmp' folder
Closed 5 years ago2
Output FASTA header format?
Closed 5 years ago2
mem or disk issue?
Closed 5 years ago4
Compilation error - cannot find AminoAcidLookupTables.h
Closed 6 years ago2
Option to change genetic code (translation table)?
Closed 6 years ago8