Issue with Docker image soedinglab/plass:latest
winkel111 opened this issue · comments
When I try to run plass in a docker container from image soedinglab/plass:latest on my Linux box with the command:
user@ubuntu:~/data$ docker run -t -i --rm -v "$(pwd):/app" -w /app soedinglab/plass:latest assemble reads1 reads2 assembly.fas tmp
I get this error message:
/usr/local/bin/plass: 8: /usr/local/bin/plass: Syntax error: newline unexpected (expecting ")")
The container runs fine with soedinglab/plass:version-3 or earlier.
Environment:
Ubuntu 20.04.2 LTS focal x86_64
Kernel: 5.4.0-65-generic
Docker engine: 20.10.3 linux/amd64
Whoops, thanks for the bug report.
You can also use the biocontainer based on the conda plass (see https://biocontainers.pro/tools/plass).
The docker hub docker should be rebuilt soon.
It works! Thanks for the quick fix!