PhenoMeNal's repositories
container-pwiz
The ProteoWizard Library and Tools are a set of modular and extensible open-source, cross-platform tools and software libraries that facilitate proteomics data analysis, developed by the Proteowizard Team at http://proteowizard.sourceforge.net/. This repository contains the Docker image to convert from many vendor raw data formats to mzML via Linux WINE.
container-galaxy-k8s-runtime
PhenoMeNal runtime for Galaxy running inside a container orchestrator
KubeNow-plugin
PhenoMeNal deployment as a plugin for KubeNow
helm-charts
PhenoMeNal Helm Charts
cloud-deploy-kubenow
This repository contains scripts to manage the PhenoMeNal cloud CRE.
cloud-deploy-kubenow-dalcotidine
Cloud deploy kubenow fork for Dalcotidine release - A separate clone is needed instead of just a branch due to the inability of the TSI Portal backend to work against a different branch than master:(
container-xcms
Container for xcms + various R scripts
ng2-phenomenal-portal
PhenoMeNal Cloud Research Environment
container-tamenmr
Repository of tameNMR
tutorial_utils
Utility scripts for PhenoMeNal tutorials and practical sessions
bioc_docker
Docker containers for Bioconductor
bioconda-recipes
Conda recipes for the bioconda channel.
cloud-deploy-kubenow-cerebellin
Cloud deploy kubenow snapshot for Cerebellin
cloud-deploy-kubenow-cerebellin-20180523
cloud-deploy-kubenow-cerebellin with a new name
container-msnbase
Basic plotting, data manipulation and processing of MS-based Proteomics data.
container-portal-metadata-backend
Container for the PhenoMeNal portal metadata backend