IPB Halle

MetFragR

R package for MetFrag

MetFragRelaunched

Relaunch of the initial MetFrag project.

MetFamily

Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here, we present a novel approach for the untargeted discovery of metabolite families offering a bird's eye view of metabolic regulation in comparative metabolomics. We implemented the presented methodology in the easy-to-use web application MetFamily to enable the analysis of comprehensive metabolomics studies for all researchers worldwide. MetFamily is available under http://msbi.ipb-halle.de/MetFamily/.

MetFrag

Repo hosting the MetFrag website

MolPaintJS

Pure HTML5 / JavaScript molecular editor / viewer

GoldenMutagenesis

Support for rapid design of primers for amino acid exchanges and saturation mutagenesis by Golden Gate cloning.

MetFragTraining

Training material for MetFrag usage

CRIMSy

Cloud Resource and Information Management System

MolecularFaces

Java Server Faces UI components for chemistry and biochemistry

RMassBank_mFam

fasta-search-service

Reusable Docker container for sequence library search and alignment in relational databases with the FASTA program package

GoldenMutagenesisWeb

This repository is used for the development of the GoldenMutagenesis web application

k8sTicket

An in-kubernetes load-balancing controller using a ticket-system

Show-And-Tell_Browser-Test-Automation

analysis_R-GECO1_CDPK-FRET

Synchronisation analysis of R-GECO1 and CDPK-FRET in guard cells

biobyte

Training example for Biobyte

cdk-inchi-to-svg

Convert an InChI string to a SVG file

CRIMSy-CI

Combined Chemistry DataBase Cartridges

fasta-playground

Test project for sequence library searching

iESTIMATE

Identifying ESsenTIal Molecular vAriables in Terrestrial Ecology

ipb-charts-public

Packaging of applications for Kubernetes as Helm charts or Rancher Apps

IPBSticker

Hex Sticker for IPB, tools and Databases

ISATab-DataSets

ISA-Tab descriptions of DataSets created and managed at the IPB

libstemmer

mavenize snowball stemmer

MassBank-data

MetFamily-testthat

to generate testthat file

mFam-Classifier

one-health

An interactive knowledge base for bioactive compound discovery

SeqProc

A simple example wrapper for a command line tool with graphical interface.

specktackle

Fork of https://bitbucket.org/sbeisken/specktackle.git