phbradley / TCRdock

python tools for TCR:peptide-MHC modeling and analysis

phbradley/TCRdock Issues

Importing TCR Sequences Without V, J, CDR3 Names for Predicted PAE Binding Prediction
Updated a month ago2
Using Cryo-EM structures in TCRdock
Updated 2 months ago
`run_prediction.py` output PDB files do not contain multiple chains
Updated 3 months ago
`.pdb` files in model output should have `pLDDT` scores stored in `b_factor` column
Updated 3 months ago
`run_prediction.py` should have an `--output-dir` option
Updated 3 months ago
`BiopythonDeprecationWarning` in `tcrdock/sequtil.py`
Updated 3 months ago2
how to run "run_prediction.py" in a alphafold docker instance?
Updated 3 months ago7
"Conda env" is not working
Updated 6 months ago
Which parameters to use?
Updated 7 months ago
Decoy discrimination benchmark using finetuned model
Updated 8 months ago3
Content of pdb files before and after running docking
Closed 8 months ago2
CDR RSME
Closed 9 months ago2
Parallel setup_for_alphafold.py ?
Updated 10 months ago5
Internal alphafold library issue
Updated a year ago1
Finetuned weights
Closed a year ago2
TypeError in run_prediction.py
Closed a year ago2
Documentation of output generated by run_prediction.py
Closed 2 years ago2
How to calculate binding score from alphafold-prediction?
Closed 2 years ago5
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Closed 2 years ago