Steven Kembel's starred repositories
stat_rethinking_2022
Statistical Rethinking course winter 2022
DeepVirFinder
Identifying viruses from metagenomic data by deep learning
dragonflye
:dragon: :fly: Assemble bacterial isolate genomes from Nanopore reads
DeepMicrobes
DeepMicrobes: taxonomic classification for metagenomics with deep learning
sci-hub-injector
Adds SciHub links to popular publisher websites
gtdb-taxdump
GTDB taxonomy taxdump files with trackable TaxIds
genome-grist
map Illumina metagenomes to genomes!
minotourapp
Minotour API, web and client code
tidyamplicons
Functions to manipulate and visualize microbial community data
phylomatic-ws
Improved web service for phylomatic
PhD-defence-questions
Questions asked in PhD defences
phylomatic-awk
A CLI phylomatic written in Gawk
methylo-phyllo-diversity
Fine-scale adaptations to environmental variation and growth strategies drive phyllosphere Methylobacterium diversity.