ksahlin / isONclust

De novo clustering of long transcript reads into genes

ksahlin/isONclust Issues

Working with huge datasets
Closed 4 months ago7
Memory Problems with ONT Data
Updated 7 months ago7
Is it possible to add a “--shortname" option for isONclust to output the read name with “the read id only”?
Updated 2 years ago1
Is it possible to use isOnclust on multiple samples?
Updated 2 years ago4
About the read order in each cluster in the final_clusters.tsv file
Closed 2 years ago6
RE: IsONclust on ONY; spot died with <Signals.SIGILL: 4>.
Updated 2 years ago2
homopolymer compression?
Updated 3 years ago4
Is it possible to use isONclust to help determine whether two reads came from the same isoform?
Updated 3 years ago15
Incorporation of isONclust to a currently used pipeline (Iso-Seq, PacBio)
Closed 3 years ago5
Usage of --consensus to generate a non redundant fasta file with unique transcript sequences
Closed 3 years ago8
TypeError with simulated fastq data
Closed 3 years ago1
ValueError: min() arg is an empty sequence
Closed 3 years ago8
pipeline not an option
Closed 3 years ago1
Dependencies for running --medaka argument
Closed 3 years ago2
Stranded vs unstranded sequencing
Closed 4 years ago2
struct.error
Closed 4 years ago7
Version mismatch with pypi repos
Updated 4 years ago1
error: too few arguments
Closed 5 years ago3
isonclust command for ONT data
Closed 5 years ago19
isONclust: error: too few arguments
Closed 5 years ago2
get_sorted_fastq_for_cluster.py, line 124 // p_no_error_in_kmers = 1.0 - exp_errors_in_kmers/ float((len(seq) - k +1))
Closed 6 years ago4
Add script to create separate fasta for each cluster
Closed 6 years ago1
Threads error
Closed 6 years ago1