sirselim

pixi

Package management made easy

remarkable-hacks

additional functionality via binary patching

vopono

Run applications through VPN tunnels with temporary network namespaces

quast

Genome assembly evaluation tool

merqury

k-mer based assembly evaluation

verkko

herro

HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

sg-nex-data

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

slow5tools

Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

wf-human-variation

nanomonsv

SV detection tool for nanopore sequence reads

sicelore

Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.

wf-single-cell

ClairS

ClairS - a deep-learning method for long-read somatic small variant calling

Spectre

Copy number caller for long read data including SNV utilization

methphaser

MethPhaser: methylation-based haplotype phasing of human genomes

GFAse

Tool for globally phasing diploid assembly graphs with orthogonal data

scNanoGPS

Single cell Nanopore sequencing data for Genotype and Phenotype

buttery-eel

The buttery eel - a slow5 guppy/dorado basecaller wrapper

deeplexicon

Signal based nanopore RNA demultiplexing with convolutional neural networks

blue-crab

crab go snap snap

sigtk

A simple toolkit for manipulating nanopore signal data

baseLess

riser

Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing

wf-somatic-variation

RESPECT

Estimating repeat spectra and genome length from low-coverage genome skims

cpg_annotate

small R script to provide quick annotation and gene lists for series of IlmnID's (450k probes)

mitofish

This script generates "baited" sequences from across a provided reference to search for them in fastq file(s)

MTG-Markdown-Generator

A Python script to generate markdown tables for Magic: The Gathering cards using the Scryfall API.

MTGCardFinder

MTG Card Markdown Toolkit - a VSCode extension to grab card image and information for markdown documents.