sinonkt

google-or-tools-template

Example Google OR-tools Dockerfile

nf-tutorial-dsl-2

Nextflow DSL 2 tutorial + NBT libs.

pachelm

Pachelm [Pla - chelm] (Pachyderm + helm) helm style + laravel migration & seeds style framework to manage pipeline deployment as a package of migrations.

agnostic-box

Docker container with Nextflow, Module and EasyBuild to imitate HPC env in cloud-native infrastructure.

ansible-role-create-users

Manage users on Linux using Ansible

k8s-hard-way-practices

Practicing K8s hardway

bull

Premium Queue package for handling jobs and messages in NodeJS.

busybuild

multi-purpose container for debugging and building.

cert-manager-webhook-godaddy

A cert-manager sample repository for creating an ACME DNS01 solver webhook

charts

Curated applications for Kubernetes

chics-hpc-workshop

Tutorials on using slurm and Hyperparameters tuning example with nextflow

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

eb-bio-modules

Bioinformatics Friends

ema-quantization-transformer

R script to smoothing signal then quantize as bit levels.

esci-starter-pack

Opinionated workflow to do Reproducible Scientific Workflow at Scale on Slurm Cluster (Thailand e-Science)

fatnode-diag

Diagnose Fatnode

jbrowse

Docker Image for jbrowse

jupytent

minimal docker container based Jupyter lab/hub/notebook, provisioned resource via docker-compose.

kubespray

Deploy a Production Ready Kubernetes Cluster

nestjs-zero-to-hero

NestJS zero to hero - modern typescript back-end development

pachyderm-playground

Pachyderm playground, any poc lies here

progress-poc

Proof of concept, progress events. code example.

qtft-sor-logistics-cli

QTFT SOR logistics command client

rnaflow

A simple RNA-Seq differential gene expression pipeline using Nextflow

shapeit4

Segmented HAPlotype Estimation and Imputation Tool

sinonkt.github.io

poc main site

subquery-module-1

subquery-module-1

test-nf

Workflow, simulate workload, for testing purpose.

testtest

vcfeval

Simple VCF Evaluation tools