agnostic-box
lua-posix lua lua-filesystem lua-devel tcl needed by Lmod
which needed by easybuild
RUN yum -y install epel-release &&
yum -y install
lua-posix
lua
lua-filesystem
lua-devel
tcl
&&
yum clean all &&
rm -rf /var/cache/yum/*
Install Lmod
RUN wget https://sourceforge.net/projects/lmod/files/Lmod-${LMOD_VERSION}.tar.bz2 &&
tar -xvjf Lmod-${LMOD_VERSION}.tar.bz2 &&
cd Lmod-${LMOD_VERSION} &&
./configure --prefix=${APPS_ROOT_PATH} &&
make install &&
ln -s ${APPS_ROOT_PATH}/lmod/lmod/init/profile /etc/profile.d/z00_lmod.sh &&
ln -s ${APPS_ROOT_PATH}/lmod/lmod/init/cshrc /etc/profile.d/z00_lmod.csh &&
rm -f ../Lmod-${LMOD_VERSION}.tar.bz2
#ln -s ${APPS_ROOT_PATH}/lmod/lmod/init/profile.fish /etc/fish/conf.d/z00_lmod.fish && \
Create Modules user & Easybuild init script. Practices by dtu.dk
https://wiki.fysik.dtu.dk/niflheim/EasyBuild_modules#installing-easybuild specify MODULES_HOME
RUN groupadd -g 984 modules &&
mkdir -p $MODULES_DIR &&
useradd -m -c "Modules user" -d $MODULES_DIR -u 984 -g modules -s /bin/bash modules &&
chown -R modules:modules ${MODULES_DIR} &&
chmod a+rx ${MODULES_DIR}
ADD bootstrap/etc/profile.d/z01_EasyBuild.sh /etc/profile.d/z01_EasyBuild.sh
ENV EASYBUILD_PREFIX=${MODULES_DIR} ENV MODULEPATH=${MODULES_DIR}/modules/all:$MODULEPATH
Switch to user modules to install EasyBuild
USER modules WORKDIR /home/modules
Install EasyBuild, Simulate source profile when we ssh
RUN source /etc/profile.d/z00_lmod.sh && \
wget https://raw.githubusercontent.com/easybuilders/easybuild-framework/develop/easybuild/scripts/bootstrap_eb.py && \
python bootstrap_eb.py $EASYBUILD_PREFIX && \
rm -f bootstrap_eb.py
Switch to root before run script
USER root