Krittin Phornsiricharoenphant's repositories
slurm-on-kubernetes
Configs to deploy Slurm on Kubernetes
nstda-hpc-slurm-simulation
University at Buffalo's Slurm Simulator, a decoupled and encoded to Nextflow version for reproducible Slurm simulation analysis.
nstda-hpc-test-suite
All in One repo, docker-compose style local development environment, ansible based integration tests.
aspera-server
Aspera Enterprise Server Docker Image.
bigdatalab
Big Data Hands-On Lab on Cloudera Quickstart VM
docker-centos6-gemini-all-in-one
try to install Gemini and their deps on centos:6
docker-centos7-singularity-nextflow
Nextflow batteries-included image for Development (CentOS 7)
docker-gemini
Containerized version of Gemini, arq5x/gemini
docker-r-slurm-sim-tools
University at Buffalo's Slurm Simulation Analysis Tools in R, a containerized version + analysis tools extension
docker-slurm-simulator
A decoupled some logic off version of University at Buffalo's Slurm Simulator
docker-slurmbase
Base Image for slurmctld and slurmd
docker-slurmctld
SLURM Master Service
docker-slurmd
SLURM Node
docker-slurmdbd
Slurmdbd as docker image.
docker-slurmfe
Docker Image to imitate frontend, should've slurm, slurm-perlapi, Easybuild. and also nextflow, singularity native for service to call with out `module load` (lmod)
docker-snpeff
SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes).
docker-vt
A tool set for short variant discovery in genetic sequence data. http://genome.sph.umich.edu/wiki/vt
eigensoft
Containerized version, For Stratification purpose via smartpca.pl by havard
gemini-load-nf
Gemini preprocessing & loading workflow encoded in Nextflow
gemini-playground
opinionated scripts to managed multiple nextflow based gemini-loading, spawn gemini session for playaround wit query
geminich
a lightweight db framework for exploring genetic variation.
gwas-qc-nf
Quality control procedures for genome-wide association studies paper, another encoded version in nextflow.
impute
IMPUTE version 2 (also known as IMPUTE2) is a genotype imputation and haplotype phasing program based on ideas from Howie
microbiome-helper
Microbiome-helper Image
plink
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
redux-spine
Redux spine
shapeit
SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.