Giters
simonrharris
/
SKA
Split Kmer Analysis
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61
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11
Issues:
29
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1
simonrharris/SKA Issues
ska fasq vs ska fasta
Updated
8 months ago
SKA Type crashes when no allele is found for a locus
Updated
4 years ago
ska distances: adding isolates to databse
Updated
4 years ago
kmers split by 2 adjacent SNPs for allele-specific primers
Updated
4 years ago
multithreading
Updated
5 years ago
Comments count
3
Less memory for `merge` and `align`
Updated
5 years ago
Comments count
2
unique kmer output
Updated
5 years ago
Comments count
1
SKA run out of memory on 32 GB VM
Updated
5 years ago
Comments count
1
Is there a looping command to perform all SKA task
Closed
5 years ago
Comments count
1
Understanding split kmers produced from fasta files
Closed
5 years ago
Comments count
1
ska distance - include distance.phy PHYLIP too?
Updated
6 years ago
What is `XXXXXX_ddl.fa` ?
Updated
6 years ago
Comments count
1
Improve prediction of number of missed alignments
Updated
6 years ago
Deal with case of 2 or more SNPs within a kmer length
Updated
6 years ago
ska annotate --- generate a multi-sample VCF ?
Updated
6 years ago
Comments count
1
ska type multiple samples at once?
Updated
6 years ago
Comments count
1
ska 1.0 now in homebrew
Closed
6 years ago
Comments count
1
Order of `type` columns
Closed
6 years ago
Comments count
2
fastq -> READS ; fasta -> CONTIGS ?
Updated
6 years ago
Comments count
1
"make PREFIX=/my/dir install" still uses /usr/local
Closed
6 years ago
Comments count
1
Publish the thing
Updated
6 years ago
Comments count
3
Tag a release
Closed
6 years ago
Comments count
3
Update the wiki
Closed
6 years ago
Comments count
1
Add counts of different alleles at each site in each sample in a reference free alignment
Closed
6 years ago
Comments count
3
seg fault with "-k" option in align
Closed
6 years ago
Comments count
1
Version the kmers and/or kmerge files
Closed
6 years ago
Comments count
1
Consider using either kmerge or kmers as a file name, not both
Closed
6 years ago
Comments count
1
One command for `fasta`, `fastq` and `merge`
Updated
6 years ago
Remove rare kmers from merge file
Closed
6 years ago
Comments count
2