shihuang047

ChatGPT

🔮 ChatGPT Desktop Application (Mac, Windows and Linux)

LightGBM

A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.

alphafold

Open source code for AlphaFold.

NeMo

A scalable generative AI framework built for researchers and developers working on Large Language Models, Multimodal, and Speech AI (Automatic Speech Recognition and Text-to-Speech)

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

Mash

Fast genome and metagenome distance estimation using MinHash

pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

ipynb-quicklook

A Quick Look generator for Jupyter/IPython notebooks without further dependencies

pnet_prostate_paper

P-NET, Biologically informed deep neural network for prostate cancer classification and discovery

decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

ANCOMBC

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

biom-format

The Biological Observation Matrix (BIOM) Format Project

woltka

Woltka: a versatile meta'omic data classifier

SHOGUN

SHallow shOtGUN profiler

DEICODE

Robust Aitchison PCA from sparse count data

phylofactor

2bRAD_denovo

Genome-wide de novo genotyping with 2bRAD

2bRAD-M

tax2tree

Automated taxonomy decoration onto a tree

re-benchmarking

ONN4MST

Ontology-aware neural network (ONN) for microbial community sample source tracking!

metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

zebra_filter

Filtering out false taxonomic hits from shotgun sequencing based on genome coverage

BacDivePy

bisb-bootcamp-2021-module09

sedar

Read-only mirror of "sedar" from r-forge SVN.

BIRDMAn_Jr

sourcetracker3

strain2bfunc

imsms-ml

Data exploration and analysis scripts for the machine learning analysis of the iMSMS collaboration.