Giters
knights-lab
/
SHOGUN
SHallow shOtGUN profiler
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Stargazers:
54
Watchers:
8
Issues:
32
Forks:
19
knights-lab/SHOGUN Issues
Access to prebuild databases
Closed
3 months ago
Comments count
9
Shogun function by using kraken & Bracken output
Updated
7 months ago
Comments count
4
shogun filter - incompatible DB error
Updated
2 years ago
Issues with -a option, shogun pipeline command
Updated
2 years ago
Comments count
2
SHOGUN fails silently when bowtie2 runs out of memory
Updated
2 years ago
Comments count
1
Additional documents request
Updated
2 years ago
Comments count
1
Kegg rare removal cut-off
Closed
2 years ago
combined seqs
Updated
2 years ago
Comments count
4
Test failed after installing with conda
Closed
3 years ago
Comments count
1
Additional functional databases
Updated
3 years ago
Comments count
1
Testing conda installation
Updated
3 years ago
Comments count
8
SHOGUN creates empty files
Updated
3 years ago
Comments count
6
CUDA incompatibility error
Updated
4 years ago
Comments count
1
SHOGUN silently produces empty output alignment when BURST segfaults
Updated
4 years ago
Comments count
19
Add installation instructions for databases
Updated
5 years ago
Comments count
3
Running SHOGUN according to documentation fails with large datasets
Updated
5 years ago
Comments count
2
Mac installation
Updated
5 years ago
shogun functional fails to run with no output error
Updated
5 years ago
Add a mention of the algorithm used for redistribution
Updated
5 years ago
Taxonomy for Database
Updated
6 years ago
Comments count
3
Question: levels on functional profiling?
Closed
6 years ago
Comments count
2
Add the ability to summarize KEGG tables
Closed
7 years ago
Comments count
1
Contaminate filtering takes forever
Closed
7 years ago
Comments count
1
GreenGenes OTU table as output
Closed
7 years ago
Comments count
1
last_common_ancestor.py import module find_betweens error
Closed
7 years ago
Comments count
12
More descriptions in help strings
Closed
7 years ago
Comments count
1
Rename Embalmer to BURST
Closed
7 years ago
Comments count
1
Use --taxacut 5
Closed
7 years ago
Comments count
1
Output separate normalized strain table
Closed
7 years ago
Comments count
1
More comprehensive instructions on usage
Updated
8 years ago
Comments count
3
Error Running UTREE with SHOGUN-BUGBASE
Closed
8 years ago
Comments count
7
Fix to automatically build pickle files
Closed
8 years ago
Comments count
1