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qiyunzhu
/
woltka
Woltka: a versatile meta'omic data classifier
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65
Watchers:
9
Issues:
77
Forks:
24
qiyunzhu/woltka Issues
missing column labels when running woltka classify on individual samfile
Updated
a month ago
[Bug] KEGG database is missing reactions in certain modules
Updated
a month ago
Provide organism agnostic version of pathway_mbrs.txt in the backend via EC numbers
Updated
2 months ago
Trying to build a phylogenetic tree using output in Qiita
Updated
3 months ago
AssertionError: Conflicting values found for "RXN-13667".
Updated
4 months ago
Comments count
7
AssertionError: Conflicting values found for "1111886".
Updated
4 months ago
Comments count
3
match reads with genes:gloc = genes_pop(code & (1 << 30) - 1) KeyError: 3603
Updated
8 months ago
Comments count
10
KEGG pathways detected are not represented in pathway coverage results
Updated
10 months ago
Comments count
1
How to get the phylogenetic tree after following the recommended process to get table.biom
Updated
a year ago
Comments count
1
ValueError: cannot call `vectorize` on size 0 inputs unless `otypes` is set
Updated
a year ago
Woltka tools collapse
Closed
2 years ago
Comments count
1
Data Transformations after Functional classification of genes
Closed
2 years ago
Comments count
1
sam file parser wrong?
Closed
2 years ago
Comments count
2
different results between classify directly and collapse after
Closed
2 years ago
Comments count
8
[SUGGESTED FEATURE] Dockerized Woltka with numba acceleration
Updated
2 years ago
Finding sequences uploaded on WoL
Closed
2 years ago
Comments count
6
Enable parallel computing
Updated
2 years ago
Comments count
15
Finding strains and sub-species on WoL
Closed
2 years ago
Comments count
1
woltka classify parameter '--samples' doesn't work properly when supplied with a file (woltka, version 0.1.4, bug report)
Closed
2 years ago
Comments count
2
Support SAM file input through stdin to reduce I/O
Closed
2 years ago
Comments count
3
Alternative ordinal data structure
Closed
2 years ago
Add support for PAF format
Closed
2 years ago
Comments count
1
crown is a list
Closed
2 years ago
Comments count
1
Links in README not working
Closed
2 years ago
include q2-woltka at https://library.qiime2.org/plugins/
Closed
2 years ago
Comments count
2
Adaptive range merging policy
Updated
3 years ago
Add normalization function
Closed
3 years ago
Comments count
1
Allow for multiple stratification levels at once during functional classification
Updated
3 years ago
Have conversion from stratified biom to melted pandas table / tensor
Updated
3 years ago
Comments count
4
How to properly specify outmap
Closed
3 years ago
Comments count
6
Odd error behavior when passing incorrect read-to-rank-maps directory to classify function
Updated
3 years ago
Combined genome/gene profile allowing stratification
Updated
3 years ago
handling empty samples
Closed
3 years ago
possible to merge results of multiple input parameters or error out?
Updated
3 years ago
Comments count
1
Working example for coordinates-based functional classification using MetaCyc
Closed
4 years ago
Comments count
3
parameters for coordinates-based functional classification using MetaCyc
Closed
4 years ago
Comments count
3
Considerations of decimal or fraction arithmetic
Updated
4 years ago
Comments count
2
Implement LFU cache to replace LRU cache for speed-up
Updated
4 years ago
Check for .sam.xz extension when computing number of alignment files to read
Closed
4 years ago
Comments count
2
Benchmarks of LCA functions
Updated
4 years ago
Comments count
4
Centrifuge paired-end alignment file is not serial
Updated
4 years ago
Optimize cigar_to_lens function
Updated
4 years ago
Comments count
1
Benchmark: read map data structure
Updated
4 years ago
Comments count
6
SAM strand suffix optimization
Updated
4 years ago
Benchmarks of individual steps
Updated
4 years ago
Comments count
2
Cache classification result
Updated
4 years ago
Comments count
2
Compress SAM / BLAST files
Closed
4 years ago
Comments count
1
Implement and benchmark parallel (de)compression
Updated
4 years ago
Benchmark of rank assignment methods
Updated
4 years ago
Medium-size test system established.
Updated
4 years ago
Comments count
2
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