shendurelab/MIPGEN Issues
Long inserts
Closed 3VCF file not being loaded
Closed 2Selecting Multiple MIPs per Site
Closed 3Alignment of MIPs among each other
Closed 1No logistic scores, only -nan
Closed 3Reads have rejected SAM flags
Updated 3-trf TRF directory invalid
Closed 4mipgen_pipeline_builder input files
Closed 2Failure Flag 1
Closed 2Documentation
Closed 1using known isoform and oligos
Closed 3no masked feature file found
Closed 1All logistic scores nan
Closed 3empty SEQ fields in collapsed.sam reads
Updated 3collapsing has terminated
Closed 1Dense MIP coverage of region
Closed 1Using_more_than_1_snpfile
Closed 3removing lig-extension arms
Closed 3BWA file
Closed 4mipgen_pipeline_builder
Closed 55' Phosphorylation of the probes
Closed 6PCR amplification of MIPs oligos
Closed 3RE Digest
Closed 4too few picked mips ?
Closed 8SNPs not read for hg19
Closed 4SNP file not found
Closed