sbmlteam / libsbml

LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.

https://sbml.org/software/libsbml

sbmlteam/libsbml Issues

Improve the efficiency of the AssignmentCycles::determineAllDependencies() function
Updated a month ago
Typo in the tag name
Updated a month ago1
Unit validation with distrib uniform not working
Updated 3 months ago4
File 99107-fail-01-06-10102 not actually wrong
Updated 4 months ago
Can't install SBML in MATLAB 2023b
Updated 5 months ago1
Add piecewise-to-events translators
Updated 5 months ago1
FBC: Can't make package version 3 object in L3v2 core model.
Updated 5 months ago1
Update SBO
Updated 5 months ago
error: invalid conversion from ‘const xmlError*’
Closed 7 months ago
Libsbml Warning (SBO term consistency)
Closed 8 months ago1
Inconsistent CMake package and target names
Updated 8 months ago
Adding and removing modified times leaves detritus
Updated 8 months ago
libSBML R package power function is pow() instead of ^
Updated 9 months ago
error: non-pointer operand type 'unsigned int' incompatible with nullptr
Closed 9 months ago
Unit validation is giving incorrect warnings
Closed 9 months ago5
libsbml 5.20.* python libraries miss symbols on win and mac distributions
Closed 10 months ago4
Give access to document error log in C API
Closed 10 months ago
CompFlatteningConverter memleak
Closed 10 months ago2
issues about "--enable-fbc --enable-groups" in Mac M1
Closed 10 months ago8
Segmentation fault when doing function expansion and unit inference after conversion to L3V2
Closed 10 months ago1
checkConsistency does not report undefined function from within another function
Closed 10 months ago1
Segmentation fault with some operations after failed strict conversion
Closed 10 months ago3
Segfault during validateSBML after SBMLDocument::clone() with SBML-multi
Closed a year ago
Linking against libsbml 5.20 via CMake leads to an error.
Closed a year ago1
Validation of SBML-comp models
Closed a year ago1
Document NULL for SBMLWriter test crashes on mac
Closed a year ago
Typo in rateOf error message
Closed a year ago
Possible issue with the .setAnnotation method (Python)?
Closed a year ago8
libsbml writing out empty <listOfReactants/>
Closed a year ago3
Deleting a document crashes when SBMLTransforms is already gone
Updated a year ago24
fail with math and multi
Closed a year ago
Explicit Equations in SBML
Closed a year ago7
Conversion failure in v5.20.0
Closed a year ago
'Latest' version isn't latest.
Closed a year ago5
Python crash with idlist.at()
Closed a year ago3
bug in `SBMLTransforms::replaceFD`?
Closed a year ago2
Python 3.11 support?
Closed a year ago2
Can't add ModelHistory without dates even in L3V2
Closed a year ago4
Missing inclusion of a header in StructureFields.cpp, version 5.19.7
Closed a year ago1
Incorrect warning
Closed a year ago1
Wrong Java imports in AutoTestRunner, version 5.19.7
Closed a year ago
Time zones with offsets below -11:59 and above 11:59 are not accepted by the Date class
Closed a year ago1
Idea: Add more biological qualifiers
Closed 2 years ago2
install libsbml on mac os using Matlab interface
Closed 2 years ago5
libsbml on Windows 11 with Visual Studio Code 17 2022
Closed 2 years ago2
Function calls with more than 2 parameters prevent unit inference
Updated 2 years ago
Does bqmodel have 'hasProperty' or only bqbiol?
Closed 2 years ago4
find_package does not work on Ubuntu 22.10
Updated 2 years ago2
spatial validation rule 1221350 is to stringent
Closed 2 years ago1
libSBML SBMLode causes sym>convertChar error
Closed 2 years ago4