SBML Team

libsbml

LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.

jsbml

JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.

sbml-test-suite

The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.

python-libsbml

Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.

sbml-org-website

The source code and issue tracker for the SBML.org website.

libCombine

a C++ library for working with the COMBINE Archive format

deviser

Design Explorer and Viewer for Iterative SBML Enhancement of Representations

sbml-spatial-models

Repository of models to test exchange of sbml-spatial models.

sbml-specifications

The specification documents for SBML.

SBMLreporter

SBMLreporter provides a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model communication. SBMLreporter is a new implementation of SBML2LaTeX.

libSBML-dependencies

Set of dependencies for compiling libSBML

QtDeviser

DEVISER Edit, an UI for defining DEVISER input files

mathml-tests

Tests for infix-to-mathML and mathML-to-infix for both libsbml and jsbml.

SBMLToolbox

An open-source toolbox for working with SBML in MATLAB

libsbml-build-scripts

Scripts and utilities used to build and deploy a libSBML release

logos-and-promos

SBML logo artwork and their terms of use

sbml-level-3-paper-overleaf

Copy of Overleaf project for the SBML Level 3 paper submitted to MSB

sbmlpkgspec-paper-2017

Source files for the 2017 BMC paper titled "SBMLPkgSpec: A LaTeX Style File for SBML Package Specification Documents"

template

Template repository for software projects by the SBML Team

cdroms-2003

Archive of CD-ROMS we produced in 2003

jib-paper-2019

Paper published in the Journal of Integrative Bioinformatics in 2019

labels-try-1

labels-try-2

labels-try-3

liblx

The XML parser portion of LibSBML as a separate library.

sbml-level-3-paper

Overall repository for the SBML Level 3 paper submitted to MSB

sbml-level-3-paper-diff

Setup for running latexdiff on the SBML Level 3 paper

sbml-level-3-paper-response-letter

Response to reviewers for SBML Level 3 paper submitted to MSB

specifications-bib

specifications-tex