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sbmlteam
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sbml-specifications
The specification documents for SBML.
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6
Issues:
398
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2
sbmlteam/sbml-specifications Issues
fbc v3: empty lists?
Closed
3 months ago
Comments count
2
FBC: No 'reaction2' in final version of FBC v3
Closed
3 months ago
Comments count
10
Change event language from 't=0' to 't_i'.
Updated
5 months ago
Comments count
10
fbc-v3: missing references
Closed
8 months ago
Comments count
12
fbc-v3: Add example for polymer reaction to demonstrate new formula syntax
Closed
8 months ago
Comments count
4
fbc-v3: preparing final version
Updated
8 months ago
Comments count
2
FBC l3: ListOfKeyValuePairs should be listed as optional in UML
Closed
8 months ago
Comments count
2
fbc v3: xmlns in KeyValuePair UML could have actual URI
Closed
8 months ago
Comments count
1
fbc v3: constraint example could be clearer with semantic IDs
Closed
9 months ago
fbc-v3: Add orcid to authors, remove thanking of authors
Closed
9 months ago
Comments count
3
fbc v3: DocumentConventions don't say why things are red
Closed
9 months ago
Comments count
4
fbc-v3: Usage practices for key/value pairs
Closed
9 months ago
qual: Input Species not in FunctionTerm
Updated
a year ago
Comments count
1
SBML L3V2 units UML is incorrect (arrow direction)
Updated
a year ago
Comments count
1
No unitSize on CoordinateComponent
Updated
a year ago
Comments count
1
Spatial: clarify/comment in scope about dynamics of spatial objects
Updated
a year ago
Dead link to SBML specification on website
Closed
a year ago
Comments count
4
Spatial validation rule 21350 too stringent
Closed
2 years ago
Comments count
3
fbc-v3: required attribute `variableType` missing in `fluxObjective` examples
Closed
2 years ago
Comments count
2
fbc-v3: word missing in sentence about UserDefinedConstraint
Closed
2 years ago
Comments count
1
Spatial: Address SBML Editor comments
Closed
2 years ago
Comments count
23
Spatial: Examples links broken
Closed
2 years ago
Comments count
1
fbc-v3: UserDefinedConstraintComponent coefficient defined as double in UML
Closed
2 years ago
Comments count
7
Spatial: DiffusionCoefficient should be handled analogously to AdvectionCoefficient.
Updated
2 years ago
Comments count
6
Spatial: How does this work with simulation of core models.
Updated
2 years ago
Comments count
8
Spatial: Clarify work with other packages
Closed
2 years ago
Comments count
6
Spatial: Remove 'Robin' boundary conditions?
Closed
2 years ago
Comments count
8
Put 'difference' back in
Closed
2 years ago
Comments count
1
Allow lower-dimensional AnalyticVolumes
Closed
2 years ago
Comments count
2
Allow 0D Domains.
Closed
2 years ago
Spatial: Clarify initial conditions for single domain
Closed
2 years ago
Comments count
1
Spatial: typo in Robin description
Closed
2 years ago
Spatial: boundaryCondition vs. BoundaryCondition
Closed
2 years ago
Comments count
1
spatial spec example problematic
Closed
2 years ago
Comments count
2
Import specification content from sourceforge
Closed
3 years ago
Comments count
4
Multi: Syntax errors in the examples
Updated
3 years ago
Comments count
4
Extensive/Intensive reversed
Updated
3 years ago
Comments count
1
Update identifiers.org URLs
Updated
3 years ago
Suggested change to SBML multi-compartment model example
Updated
3 years ago
Comments count
3
Possible typo in the value of the "persistent" attribute
Updated
3 years ago
Comments count
2
Update mathml-related validation rules to reflect the ability of packages to override them.
Closed
3 years ago
Comments count
5
Clarify use of bvar in lambda element of FunctionDefinition
Closed
3 years ago
Comments count
9
Add new SBML Editors to latest spec
Closed
3 years ago
Comments count
14
Allow l3v1 packages in l3v2 documents to inherit 'id' and 'name'?
Updated
3 years ago
Comments count
9
Clarify attribute namespace rules for packages
Closed
3 years ago
Comments count
15
Update URLs to use https if possible
Closed
3 years ago
Comments count
7
Mention metaid syntax is from XML spec 1.0, not 1.1
Closed
3 years ago
Comments count
10
Render: fix examples that switch namespaces.
Updated
3 years ago
Layout: Figure 5 has a 'ListOfLineSegments' class, which should be 'ListOfCurveSegments'.
Updated
3 years ago
Update unit validation rules for compartments
Closed
3 years ago
Comments count
10
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