sanger / traction-service

Ruby on Rails exposing a RESTful API for a Long Read LIMS

https://traction.psd.sanger.ac.uk

sanger/traction-service Issues

DPL-1041 - As a stakeholder (James W) I would traction to track PacBio SMRTLink Library Types.
Updated 2 months ago1
DPL-1073 - As a long read user when I add a library to a sequencing run I want to perform a check to ensure that enough library volume is available to ensure the integrity of the data
Closed 2 months ago
Y24-096: Publish volume tracking message from Traction Service
Updated 2 months ago
DPL-949 - As a long read user (Craig) I would like the DNA control complex box barcode to be added to each well on a Sequel IIe SMRT Link 12 rather than each run so we can take advantage of adding the binding kit automatically
Closed 3 months ago2
Y24-057: Remove SMRT-Link v13 sample sheets feature flag
Closed 3 months ago
DPL-964 Research - As a long read user (James) I want the ability to track sample volumes and enable top-up management
Closed 3 months ago7
DPL-1051 - As a long read user (James) I would like an estimate of the amount of work to track sample volumes and enable top-up management
Closed 3 months ago3
DPL-999 - As long read users it would be helpful to modify the historical data for pools and libraries to fit in with the new structure
Closed 3 months ago1
Y24-059 - As developers we need to run a volume check on all existing production data to decide how to ensure there are no issues when we add the volume check to libraries
Closed 3 months ago1
Y24-032 - Add new 'Sample is Indexed' header for SMRTLink v13 Revio sample sheets
Closed 3 months ago1
DPL-1072 - As a long read user when I create a pool I want to perform a check to ensure that enough library volume is available to retain the integrity of the data
Closed 3 months ago
DPL-1106 - As developers we need to create a printers table so we can add printers without having to redeploy traction-ui
Closed 3 months ago3
DPL-1070 - As a long read user when I modify the library volume I would like a volume check performed to ensure the integrity of the data
Closed 4 months ago
Revio Multiplexing - phase 3 - tasks
Closed 4 months ago1
DPL-1070-aliquot - As developers, we need to split DPL-1070 to separate the 'aliquotable' volume checks which enables independent deployment of this story
Closed 4 months ago
DPL-1040 - As Long Read users (James, Craig) we need traction to use the new sample sheet format for v13 revio runs because SMRT Link 13.1 requires it [May release]
Closed 4 months ago1
DPL-1069 - As developers we need to introduce volume check to support volume tracking
Closed 4 months ago1
DPL-998-1 - As developer we need to tidy up after the Revio multiplexing work to remove any code, data and tables that are no longer needed to reduce technical debt and improve maintainability
Closed 4 months ago
Y24-049 Modify the TOL report view to put requests/samples as a priority
Closed 4 months ago
DPL-1074 - As a long read user I would like the library volume used sent to the warehouse when I create a sequencing run so I can track library volumes and enable top-up management
Updated 4 months ago
DPL-1071 - As a long read user I would like the volume to be sent to the warehouse so I can track library volumes and enable top-up management
Updated 4 months ago
Y24-018 Validate that an API endpoint can place a compound sample tube as a library
Closed 4 months ago
DPL-991 - As developers we need to modify the sample sheets to support revio multiplexing
Closed 4 months ago
DPL-1061 As a developer (Steve) I would like traction to use a copy of production data in training
Closed 4 months ago1
DPL-898 - As a Long Read user (Craig) I need to ensure that unbarcoded (untagged) samples have an entry in the Adapters / Barcodes field in the sample sheet as it is required
Closed 5 months ago1
DPL-1112 - Update run creation/edit to use well aliquots
Closed 5 months ago
DPL-989 - As developers we need to modify pool creation to use aliquots rather than libraries to support revio multiplexing
Closed 5 months ago
DPL-1094-2: Add additional fields to the tubes_report view
Closed 5 months ago
DPL-990 - As developers we need to modify libraries to use aliquots to support revio multiplexing
Closed 5 months ago
DPL-994 - As a long read user when I create a new sequencing run I should be able to add libraries or pools to a well as this is how our lab process works and it will enable us to better support revio multiplexing
Closed 5 months ago
DPL-1110 Process genome size as part of sample reception
Closed 5 months ago
Revio Multiplexing - Disassociating libraries from pools (phase 2)
Closed 5 months ago1
DPL-947 - As a long read user (Craig) I need the DNA control complex box barcode to be required on a v12 Sequel IIe run and included on the sample sheet because it is required for SMRT LInk and we are currently having to enter it manually
Closed 5 months ago1
DPL-1109 Remove the old schema Reception V1 API
Closed 5 months ago
DPL-892 - As a long Read User (Robin) I need a new tag set for ONT for the new assay type
Closed 6 months ago1
DPL-1094 - As an SSR (Alice) I would like to run a regular report on the cost code and study information for ToL samples which can be incorporated into the google sheet for billing purposes
Closed 6 months ago
DPL-1039 - As a stakeholder (James W) I would like traction to support SMRTLink v13 sample sheets.
Closed 6 months ago
DPL-1000 - As developers we need to modify requests to use aliquots to support a more flexible way of doing multiplexing
Closed 6 months ago
DPL-988 - As developers we need to modify pacbio sequencing run so that a well can have aliquots to support revio multiplexing
Closed 7 months ago
DPL-987 - As developers we need to modify library so it can have it's own tube so a library can exist in its own right without belonging to a pool
Closed 7 months ago2
DPL-986 - As developers we need to create an aliquot entity which can be used to create aliquots of samples and libraries for multiplexing and sequencing runs
Closed 7 months ago2
DPL-965 Research - As a long-read user (James) I want the ability to create pools from samples or libraries to support revio multiplexing
Updated 8 months ago8
DPL-1001 - As developers we need to modify pacbio wells to use aliquots to support flexible multiplexing
Closed 8 months ago1
DPL-887-2 - As a developer I would like to refactor the reception to provide a clear way of handling samples
Closed 9 months ago
DPL-886 [BUG] Retrofit samples that bypassed Traction
Closed 10 months ago1
DPL-879 [BUG] Fix configuration hierarchy mismapping
Closed a year ago
DPL-842 [BUG] - As developers we need to be able to rebroadcast old traction runs to the warehouse which will not currently send
Closed a year ago1
DPL-851 - Remove deprecated columns as they are no longer required and all the data has been moved to other columns
Closed a year ago
DPL-846 - As long read (Craig) I would like to ensure that Revio single plate runs should be restricted to plate 1
Updated a year ago
DPL-837 - As a long read user I need to validate the sequencing kit box barcode further to ensure that the correct wells are used (BP-Low ¦ Could've)
Updated a year ago