Giters
sanger
/
crawler
Store sample data from Lighthouse labs
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Stargazers:
4
Watchers:
6
Issues:
135
Forks:
3
sanger/crawler Issues
DPL-639 Restrict values in the schema of priority flags to booleans (S=M, V=2)
Updated
6 months ago
Comments count
6
DPL-931 Crawler to publish schemas on start
Closed
6 months ago
Comments count
1
DPL-883 Remove the centres validation (S=L; C=M)
Closed
6 months ago
Comments count
1
DPL-722 As TL (Tom) I would like to remove SFTP plate map processing logic from Crawler/Lighthouse application so that we can simplify the application.
Closed
6 months ago
Comments count
1
DPL-1100 - As developers we need to fix and merge the dependencies to reduce security problems and reduce techncial debt
Closed
8 months ago
Comments count
5
DPL-777 Back-populate every UUID for samples in MongoDB
Closed
a year ago
Comments count
1
DPL-759 Generate Sample UUIDs for RVI plate list 2
Updated
a year ago
DPL-204 - Add new RabbitMQ instance for plate maps handling (S=S;C=S)
Closed
a year ago
Comments count
1
DPL-nnn Decide what to do when Null values for testing date
Updated
2 years ago
DPL-366 [BUG] Patch data in MongoDB to keep uniqueness of lh_sample_uuid
Closed
2 years ago
DPL-nnn [BUG] Creating unified_warehouse and event_warehouse manually causes two tests to fail [C=M,V=2]
Closed
2 years ago
DPL-580: UUIDs need to be added to samples to be picked
Closed
2 years ago
Comments count
1
DPL-367 Create a migration script for initialising the MongoDB database for new systems
Closed
2 years ago
DPL-nnn Timestamp in feedback message
Closed
2 years ago
DPL-nnn DRAFT REQUEST - Change uniqueness conditions for Mongodb samples
Closed
2 years ago
Comments count
1
DPL-453 RVI: Check source plates and support test run week of 15th Aug
Closed
2 years ago
Comments count
4
DPL-471 - Fix historical data for malfomed root sample ids to support important samples algorithim (C=?, V=4)
Closed
2 years ago
Comments count
2
DPL-048 Reject malfomed root sample ids to support important samples algorithm (C=?, V=4)
Closed
2 years ago
Comments count
6
DPL-042 | Research: Understand changes required to move 'fit to pick logic' from core informatics to GSU [Heron]
Closed
2 years ago
Comments count
1
DPL-014 - Back load DART database to CP 'Fit to pick' samples prior to December 2020
Closed
2 years ago
Comments count
3
DPL-029 - Make lab_id a mandatory field
Closed
2 years ago
Comments count
1
DPL-201 - JSON Schema definition for plate map data message (S=M; C=S)
Closed
2 years ago
Comments count
2
DPL-198 - Feedback message JSON Schema (S=S; S=S)
Closed
2 years ago
Comments count
1
DPL-203 - Think a way of disabling centres so we can change the source of a specific centres to read plate maps data from RabbitMQ instead of SFTP (S=M;C=M)
Closed
2 years ago
Comments count
2
DPL-253 Define all situations on updating samples from queue depending on the picking status
Closed
2 years ago
Comments count
2
DPL-343 - Archive backup files from centres not in use [C=S, V=4]
Closed
2 years ago
Comments count
2
DPL-435 Heron OKR UAT data tests
Closed
2 years ago
Comments count
18
DPL-488 Ensure Crawler generates COG UK IDs for all new samples received on plate maps via SFTP
Closed
2 years ago
DPL-480 [BUG] Negative test samples show fit to pick as true when they should be false
Closed
2 years ago
Comments count
1
[2nd August] DPL-447 Add positive result / data / debug logging to RabbitMQ processes
Closed
2 years ago
DPL-407-2 RVI - Creation of script to generate Source plate and Sample UUIDs
Closed
2 years ago
DPL-200 - Support UPDATE messages coming from RabbitMQ messages (S=L; C=M)
Closed
2 years ago
DPL-202 - Process CREATE messages from RabbitMQ as a data source (S=L; C=M)
Closed
2 years ago
DPL-199 - Reporting of errors from different situations (S=L; C=M)
Closed
2 years ago
DPL-087 - As a Genomic Surveillance Officer (AK) I would like a new validation rule applied to plate maps such samples with a date tested in the future raise an error
Closed
2 years ago
Comments count
2
DPL-nnn Decouple warehouse writes so migrations don't block the process
Closed
2 years ago
Comments count
2
DPL-nnn Ensure frequent housekeeping of is_current column in lighthouse_samples
Closed
2 years ago
Comments count
1
DPL-255 Avro schema registry support for crawler
Closed
3 years ago
DPL-nnn Generate Test Run broken (HTTPS issue?)
Updated
3 years ago
DPL-085 [BUG] Crawler downtime
Closed
3 years ago
Comments count
2
DPL-181 Improve Crawler run performance to avoid manual intervention (C=S, V=5)
Closed
3 years ago
Comments count
2
DPL-040 Mark LH data as uncertain when multiple plate maps are uploaded for a plate and well [Heron]
Closed
3 years ago
Comments count
10
DPL-050 Automated processing on Beckmans: New LH lab Newcastle [Heron]
Updated
3 years ago
Comments count
3
DPL-055 [miss understanding] Priority Samples Change (for Beckman) - Preferential Sequence [Heron]
Closed
3 years ago
DPL-058-01 Add endpoint versioning
Closed
3 years ago
DPL-025 Automated processing on Beckmans: New LH lab Leamington Spa (LSPA) [Heron]
Closed
3 years ago
Comments count
3
DPL-034 UAT Action - Setup Cherrypick Test Data - Crawler elements [Heron]
Closed
3 years ago
Comments count
1
DPL-018 Don't sequence control sample with root sample ID prefix “ZZA” [Heron]
Closed
3 years ago
Comments count
6
DPL-016 Stop parsing the unconsolidated plate map data from MK, AP and GLS on date ? [Heron]
Closed
3 years ago
Comments count
2
DPL-027 Automated processing on Beckmans: New LH lab Brants Bridge (BRBR) [Heron]
Closed
3 years ago
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