Giters
Samuel Lampa (samuell)

samuell

Geek Repo

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followers

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following

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Company:Karolinska University Hospital

Location:Stockholm

Home Page:https://savantic.se

Twitter:@smllmp

Github PK Tool:Github PK Tool

Organizations
flowbase
pharmbio
rdfio
scipipe

Samuel Lampa's starred repositories

act

Run your GitHub Actions locally 🚀

Language:GoLicense:MITStargazers:51334Issues:165Issues:1083

pingora

A library for building fast, reliable and evolvable network services.

Language:RustLicense:Apache-2.0Stargazers:19903Issues:165Issues:131

zoxide

A smarter cd command. Supports all major shells.

Language:RustLicense:MITStargazers:19670Issues:48Issues:511

mdBook

Create book from markdown files. Like Gitbook but implemented in Rust

Language:RustLicense:MPL-2.0Stargazers:16989Issues:123Issues:1253

top-github-users

Check your ranking in GitHub! Don't forget to star ⭐ this repository.

Stargazers:3457Issues:49Issues:111

vim-dadbod

dadbod.vim: Modern database interface for Vim

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ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

Language:PythonLicense:Apache-2.0Stargazers:902Issues:34Issues:137

hugoplate

Hugoplate is a free starter template built with Hugo and TailwindCSS that will save you hours of work.

Language:JavaScriptLicense:MITStargazers:643Issues:11Issues:109

duc

Dude, where are my bytes: Duc, a library and suite of tools for inspecting disk usage

Language:CLicense:LGPL-3.0Stargazers:560Issues:24Issues:264

noodles

Bioinformatics I/O libraries in Rust

Language:RustLicense:MITStargazers:459Issues:21Issues:194

Prodigal

Prodigal Gene Prediction Software

Language:CLicense:GPL-3.0Stargazers:413Issues:26Issues:97

awesome-wails

⭐ A carefully selected list of Wails applications

License:MITStargazers:360Issues:10Issues:8

FastANI

Fast Whole-Genome Similarity (ANI) Estimation

Language:C++License:Apache-2.0Stargazers:352Issues:12Issues:123

janggu

Deep learning infrastructure for genomics

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:251Issues:20Issues:31

scidataflow

Command line scientific data management tool

Language:RustLicense:MITStargazers:186Issues:1Issues:15

chewBBACA

BSR-Based Allele Calling Algorithm

Language:HTMLLicense:GPL-3.0Stargazers:123Issues:17Issues:127

SKESA

SKESA assembler

Language:C++License:NOASSERTIONStargazers:105Issues:17Issues:41

ncbi-acc-download

Download files from NCBI Entrez by accession

Language:PythonLicense:Apache-2.0Stargazers:104Issues:6Issues:24

granges

A Rust library and command line tool for working with genomic ranges and their data.

Language:RustStargazers:88Issues:0Issues:0

bionix

Functional highly reproducible bioinformatics pipelines

Language:NixLicense:BSD-3-ClauseStargazers:74Issues:6Issues:19

nanodisco

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

Language:RLicense:NOASSERTIONStargazers:64Issues:7Issues:78

phables

🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes

Language:PythonLicense:MITStargazers:64Issues:2Issues:37

fla.sh

Paper-light flashcards in under 40 lines of bash

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linter-rules-for-nextflow

Linter rules for Nextflow DSL scripts

Language:GroovyLicense:Apache-2.0Stargazers:24Issues:0Issues:0

kerblam

A Rust CLI to manage your data analysis projects in a streamlined, easy and simple way, getting reproducibility for free.

Language:RustLicense:MITStargazers:8Issues:0Issues:0

trails

Tree reconstruction of ancestry using incomplete lineage sorting

Language:PythonLicense:MITStargazers:5Issues:0Issues:0

bonsai

Visualize and analyze resistance and outbreak of bacterial pathogen

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gms_16S

A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.

Language:GroovyLicense:GPL-3.0Stargazers:4Issues:11Issues:15

svist4get

A simple visualisation tool for genomic tracks from sequencing experiments.

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Highlighter

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