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pharmb.io (pharmbio)

pharmb.io

pharmbio

Geek Repo

Pharmaceutical Bioinformatics research group at Uppsala University

Location:Uppsala, Sweden

Home Page:pharmb.io

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pharmb.io's repositories

plot_utils

Repo that groups utility functions for e.g. plotting of Conformal prediction metrics

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plaid

PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Design problem.

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robotlab

Cell painting and imaging with robots

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CP-Chem-MoA

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imagedb

Image database for pharmbio microscope images

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pharmbio-web

The Static (Hugo) website for pharmb.io

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big-data_course

Material for the Big Data in life science course

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big-data_deeplearning

Big data course, Deep learning repo

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pharmbio-notebook

Docker containers for interactive notebook environments for rancher cluster

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conformal-eval

Refactored version of the Plot_utils library, for generating a single installable distribution

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cplogd-v2.0

cpLodD version 2.0 - using ChEMBL v33

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nw-cp

A master thesis on using Graph Neural Networks and Network Analysis approach in morphological profiling of chemical perturbated cells

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squid

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declis

DNA-encoded chemical library information system

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Assignment_3a_LeukemiaCells

Easier paths leukemia cells BDLS Assignment 3.a

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cp_pipeline

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cppipeline2

version 2 of cppipeline

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DeepProfiler_Benjamin

DeepProfiler analysis scripts for RH30, Specs3k datasets

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dorna-lab-automation

Server and WebGUI for Dorna control, built for the Laboratory Automation in Life Sciences course.

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labdesign

Software for design of (robot)-lab experiments

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Nima_Msc_Presentation

Nima's Master thesis final presentation on Intersecting Graph Representation Learning and Cell Profiling.

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pharmbio_LaTeX_templates

A series of LaTeX templates used by us

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pharmbio_package

A Python package automating routine pharmaceutical bioinformatics laboratory analyses and quality control checks.

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pipelinegui

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plaid-gui

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robotvision

Machine vision system project for automated biological lab.

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rstudio-docker

Dockerfile for rstudio server with python support

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SC_analysis_Benjamin

Main analysis scripts of sc master thesis

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SegMine

Playground for Segmentation and Data-mining

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ULLA_AIinDD

ULLA AI in Drug Discovery course material

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