Samuel Lampa's repositories
scicommander
Run shell commands in a scientifically reproducible and robust way
FastANI-fork
Fast Whole-Genome Similarity (ANI) Estimation
bacalhau-fork
Compute over Data framework for public, transparent, and optionally verifiable computation
bash-preexec-fork
⚡ preexec and precmd functions for Bash just like Zsh.
bashtograph
Rudimentary script to convert slightly marked up bash scripts to GraphViz graphs
bioscripts
Various scripts used for bioinformatics analyses
bonsai
Visualize and analyze resistance and outbreak of bacterial pathogen
friction-fork
Friction Motion Graphics
ishell-fork
Library for creating interactive cli applications.
JASEN-fork
Epitypification pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
marker-fork
Convert PDF to markdown quickly with high accuracy
MolecularNodes_fork
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
nanometa-live-fork
A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.
nf-training-fork
Nextflow training material
open-llms-fork
📋 A list of open LLMs available for commercial use.
perfect-bioinformatic-tools-fork
What should perfect bioinformatic tools be like?
pty-fork
PTY interface for Go
raspir-fork
Raspir, the rare species identifier
scidataflow-fork
Command line scientific data management tool
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation