ryan2han's repositories
Cell-State-Atlas-2022
Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
single-cell-best-practices
https://www.sc-best-practices.org
ant-learn-pandas
pandas学习课程代码仓库
atlas_protocol
A computational protocol for atlas-level data integration and analysis as performed in Salcher et al. (2022).
cbcrg_alphafold
CBCRG fork of the open source code for AlphaFold for nf-core/proteinfold
checkatlas
One liner tool to check the quality of your single-cell atlases.
luca
Single-cell Lung Cancer Atlas with 1.2M cells
MarginExpand
MarginExpand用于解决阅读pdf、电子书和论文时做笔记地方不够的问题，MarginExpand可以实现Pdf margin expand功能，可批量为pdf文件添加白边，实现裁切功能，并且可以挑选纸张的样式，非常适合电子笔记爱好者。本项目用python，pyqt，pyside2开发，可以独立运行在windows系统。MarginExpand is used to solve the problem of insufficient space for taking notes when reading pdfs, e-books and papers. MarginExpand can realize the Pdf margin expand function
nf-training-advanced
Customer workshop materials
nmp-liver
Single cell analysis of donor livers pre- and post machine perfusion
NSForest
A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing
openproblems
Formalizing and benchmarking open problems in single-cell genomics
panpipes
Multi-modal single cell analysis pipelines
scflowpy
Python helper package for scFlow
scib-metrics
Accelerated, Python-only, single-cell integration benchmarking metrics
scib-pipeline
Snakemake pipeline that works with the scIB package to benchmark data integration methods.
scPLC
Codes for the scPLC project
ShadowsocksR-Windows
Ship of Theseus
Single-cell-data-visualization-tools
Collection of single-cell data visualization tools.
tabula-muris-senis
Tabula Muris Senis
video-source-code
source code used in my uploaded videos
workshop-scRNAseq
Single cell RNA sequencing analysis course