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ryan2han's starred repositories

AsperaSRAgetter

AsperaSRAgetter provides an easy way to download sequencing data from ENA by using Aspera.

Language:PythonMIT200

CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Language:Jupyter NotebookMIT30400

rust-by-practice

Learning Rust By Practice, narrowing the gap between beginner and skilled-dev through challenging examples, exercises and projects.

Language:RustCC-BY-4.01163200

CeleScope

Single Cell Analysis Pipelines

Language:PythonMIT8300

yascp

scRNA multimodal analysis pipeline utilised for large dataset processing

Language:PythonGPL-3.01300

pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

Language:CNOASSERTION108800

linuxtools_rst

Linux工具快速教程

Language:HTML580500

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

Language:RGPL-3.020600

twinny

The most no-nonsense, locally or API-hosted AI code completion plugin for Visual Studio Code - like GitHub Copilot but completely free and 100% private.

Language:TypeScriptMIT228000

scDEF

Deep exponential families for single-cell data.

Language:Python1800

rpy2-complex-heatmap-grammar

Python heatmap interface using intuitive grammar of graphics, implemented as an rpy2 wrapper around ComplexHeatmap package.

Language:PythonMIT900

shadowsocks-rust

A Rust port of shadowsocks

Language:RustMIT804900

plotnine

A Grammar of Graphics for Python

Language:PythonMIT388700

pygwalker

PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

Language:PythonApache-2.01063700

pyecharts

🎨 Python Echarts Plotting Library

Language:PythonMIT1462000

Cell-State-Atlas-2022

Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney

Language:Jupyter NotebookMIT1400

Multi-omics-human-cerebellum

code for Multi-omics-human-cerebellum datasets

Language:R100

Palantir

Single cell trajectory detection

Language:Jupyter NotebookGPL-2.020200

hydra

Hydra is a framework for elegantly configuring complex applications

Language:PythonMIT837600

luca

Single-cell Lung Cancer Atlas with 1.2M cells

Language:PythonBSD-3-Clause5400

atlas_protocol

A computational protocol for atlas-level data integration and analysis as performed in Salcher et al. (2022).

Language:Jupyter NotebookBSD-3-Clause600

dask

Parallel computing with task scheduling

Language:PythonBSD-3-Clause1221200

vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

Language:JavaScriptMIT14700

Biopython-cn

Biopython Tutorial Chinese Translation

Language:Python22000

AI2BMD

AI-powered ab initio biomolecular dynamics simulation

MIT14700

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

Language:HTMLMIT218000

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

Language:PythonBSD-3-Clause40600

whisperX

WhisperX: Automatic Speech Recognition with Word-level Timestamps (& Diarization)

Language:PythonBSD-4-Clause994600

prodigy

Predict the binding affinity of protein-protein complexes from structural data

Language:PythonApache-2.09500

glasbey

Algorithmically create or extend categorical colour palettes

Language:PythonMIT17000