ryan2han

0

followers

following

stars

ryan2han's starred repositories

pyecharts

🎨 Python Echarts Plotting Library

Language:PythonMIT14676 378 1889

dask

Parallel computing with task scheduling

Language:PythonBSD-3-Clause12270 211 5092

rust-by-practice

Learning Rust By Practice, narrowing the gap between beginner and skilled-dev through challenging examples, exercises and projects.

Language:RustCC-BY-4.011734 72 183

pygwalker

PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

Language:PythonApache-2.010785 66 188

whisperX

WhisperX: Automatic Speech Recognition with Word-level Timestamps (& Diarization)

Language:PythonBSD-2-Clause10188 125 654

hydra

Hydra is a framework for elegantly configuring complex applications

Language:PythonMIT8444 128 1370

shadowsocks-rust

A Rust port of shadowsocks

Language:RustMIT8113 143 760

linuxtools_rst

Linux工具快速教程

Language:HTML5815 227 15

plotnine

A Grammar of Graphics for Python

Language:PythonMIT3909 63 658

twinny

The most no-nonsense, locally or API-hosted AI code completion plugin for Visual Studio Code - like GitHub Copilot but completely free and 100% private.

Language:TypeScriptMIT2357 14 159

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

Language:HTMLMIT2194 19 1659

pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.

Language:CNOASSERTION1104 37 303

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

Language:PythonBSD-3-Clause408 10 249

CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Language:Jupyter NotebookMIT311 10 189

Biopython-cn

Biopython Tutorial Chinese Translation

Language:Python222 33 7

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

Language:RGPL-3.0215 2 178

Palantir

Single cell trajectory detection

Language:Jupyter NotebookGPL-2.0203 10 118

glasbey

Algorithmically create or extend categorical colour palettes

Language:PythonMIT170 3 5

vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

Language:JavaScriptMIT149 8 885

AI2BMD

AI-powered ab initio biomolecular dynamics simulation

MIT148 8 7

prodigy

Predict the binding affinity of protein-protein complexes from structural data

Language:PythonApache-2.096 16 14

CeleScope

Single Cell Analysis Pipelines

Language:PythonMIT83 3 90

luca

Single-cell Lung Cancer Atlas with 1.2M cells

Language:PythonBSD-3-Clause54 4 9

scDEF

Deep exponential families for single-cell data.

Language:Python18 40

Cell-State-Atlas-2022

Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney

Language:Jupyter NotebookMIT14 2 1

yascp

scRNA multimodal analysis pipeline utilised for large dataset processing

Language:PythonGPL-3.013 4 1

rpy2-complex-heatmap-grammar

Python heatmap interface using intuitive grammar of graphics, implemented as an rpy2 wrapper around ComplexHeatmap package.

Language:PythonMIT9 3 2

atlas_protocol

A computational protocol for atlas-level data integration and analysis as performed in Salcher et al. (2022).

Language:Jupyter NotebookBSD-3-Clause6 5 7

AsperaSRAgetter

AsperaSRAgetter provides an easy way to download sequencing data from ENA by using Aspera.

Language:PythonMIT200

Multi-omics-human-cerebellum

code for Multi-omics-human-cerebellum datasets

Language:R100