rogerzhanglijie's repositories

16S-rDNA-V3-V4

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

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adanet

Fast and flexible AutoML with learning guarantees.

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alphafold

Open source code for AlphaFold.

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autogen

Enable Next-Gen Large Language Model Applications. Join our Discord: https://discord.gg/pAbnFJrkgZ

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CLIP

CLIP (Contrastive Language-Image Pretraining), Predict the most relevant text snippet given an image

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crc_meta

Code and analysis results for the CRC shotgun meta-analysis

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Getting-Things-Done-with-Pytorch

Jupyter Notebook tutorials on solving real-world problems with Machine Learning & Deep Learning using PyTorch. Topics: Face detection with Detectron 2, Time Series anomaly detection with LSTM Autoencoders, Object Detection with YOLO v5, Build your first Neural Network, Time Series forecasting for Coronavirus daily cases, Sentiment Analysis with BERT.

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hap.py

Haplotype VCF comparison tools

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ilus

A handy pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis.

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Machine-Learning-from-Scratch

Succinct Machine Learning algorithm implementations from scratch in Python, solving real-world problems (Notebooks and Book). Examples of Logistic Regression, Linear Regression, Decision Trees, K-means clustering, Sentiment Analysis, Recommender Systems, Neural Networks and Reinforcement Learning.

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MONOD2

MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data

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Python-100-Days

Python - 100天从新手到大师

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rnaseq-nf

A proof of concept of RNAseq pipeline

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shallowHRD

This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).

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Solubility-Prediction-with-Graph-Neural-Networks

GNN, GCN, Molecular Solubility, RDKit, Cheminformatics

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VAE_animeface

Variational autoencoder for anime face reconstruction

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vcfstats

Powerful statistics for VCF files

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