rogerzhanglijie's repositories
16S-rDNA-V3-V4
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
alphafold
Open source code for AlphaFold.
autogen
Enable Next-Gen Large Language Model Applications. Join our Discord: https://discord.gg/pAbnFJrkgZ
CLIP
CLIP (Contrastive Language-Image Pretraining), Predict the most relevant text snippet given an image
crc_meta
Code and analysis results for the CRC shotgun meta-analysis
Getting-Things-Done-with-Pytorch
Jupyter Notebook tutorials on solving real-world problems with Machine Learning & Deep Learning using PyTorch. Topics: Face detection with Detectron 2, Time Series anomaly detection with LSTM Autoencoders, Object Detection with YOLO v5, Build your first Neural Network, Time Series forecasting for Coronavirus daily cases, Sentiment Analysis with BERT.
hap.py
Haplotype VCF comparison tools
ilus
A handy pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis.
Machine-Learning-from-Scratch
Succinct Machine Learning algorithm implementations from scratch in Python, solving real-world problems (Notebooks and Book). Examples of Logistic Regression, Linear Regression, Decision Trees, K-means clustering, Sentiment Analysis, Recommender Systems, Neural Networks and Reinforcement Learning.
MONOD2
MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data
Python-100-Days
Python - 100天从新手到大师
rnaseq-nf
A proof of concept of RNAseq pipeline
shallowHRD
This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).
Solubility-Prediction-with-Graph-Neural-Networks
GNN, GCN, Molecular Solubility, RDKit, Cheminformatics
VAE_animeface
Variational autoencoder for anime face reconstruction
vcfstats
Powerful statistics for VCF files