rogerzhanglijie

16S-rDNA-V3-V4

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

adanet

Fast and flexible AutoML with learning guarantees.

alphafold

Open source code for AlphaFold.

autogen

Enable Next-Gen Large Language Model Applications. Join our Discord: https://discord.gg/pAbnFJrkgZ

CLIP

CLIP (Contrastive Language-Image Pretraining), Predict the most relevant text snippet given an image

crc_meta

Code and analysis results for the CRC shotgun meta-analysis

Getting-Things-Done-with-Pytorch

Jupyter Notebook tutorials on solving real-world problems with Machine Learning & Deep Learning using PyTorch. Topics: Face detection with Detectron 2, Time Series anomaly detection with LSTM Autoencoders, Object Detection with YOLO v5, Build your first Neural Network, Time Series forecasting for Coronavirus daily cases, Sentiment Analysis with BERT.

hap.py

Haplotype VCF comparison tools

hrdetect-pipeline

ilus

A handy pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis.

Machine-Learning-from-Scratch

Succinct Machine Learning algorithm implementations from scratch in Python, solving real-world problems (Notebooks and Book). Examples of Logistic Regression, Linear Regression, Decision Trees, K-means clustering, Sentiment Analysis, Recommender Systems, Neural Networks and Reinforcement Learning.

metabolic_analysis

MONOD2

MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data

Python-100-Days

Python - 100天从新手到大师

rnaseq-nf

A proof of concept of RNAseq pipeline

shallowHRD

This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).

Solubility-Prediction-with-Graph-Neural-Networks

GNN, GCN, Molecular Solubility, RDKit, Cheminformatics

VAE_animeface

Variational autoencoder for anime face reconstruction

vcfstats

Powerful statistics for VCF files

wesReport