rogerzhanglijie / ilus

A handy pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis.

Ilus

Ilus is a handy pipeline generater for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis.

Installation

ilus is writed by Python and release in PyPI. You can install it just by running the following command:

pip install ilus

You can type ilus in your commandline terminal if everything is smooth.

Quick Start

There are several functions in ilus:

$ ilus --help

You will see all the functions:

usage: ilus [-h] {WGS,genotype-joint-calling,VQSR} ...

ilus: A WGS analysis pipeline.

optional arguments:
    -h, --help            show this help message and exit

ilus commands:
{WGS,genotype-joint-calling,VQSR}
    WGS                 Creating pipeline for WGS(from fastq to genotype VCF)
    genotype-joint-calling Genotype from GVCFs.
    VQSR                VQSR

Here is all the Chinese README for how to creat WGS/WES pipeline by ilus.

English version is coming.