rogerzhanglijie

DiffDock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

langchain

🦜🔗 Build context-aware reasoning applications

oxdna-viewer

oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis

AppAgent

AppAgent: Multimodal Agents as Smartphone Users, an LLM-based multimodal agent framework designed to operate smartphone apps.

ai2apps

Setup AI2Apps at local system so you can use your own OpenAI key or make more back-end features.

mobile-aloha

Mobile ALOHA: Learning Bimanual Mobile Manipulation with Low-Cost Whole-Body Teleoperation

autogen

A programming framework for agentic AI. Discord: https://aka.ms/autogen-dc. Roadmap: https://aka.ms/autogen-roadmap

llama

Inference code for Llama models

neural-fingerprint

Convolutional nets which can take molecular graphs of arbitrary size as input.

PrimateAI-3D

RNAseq-workflow

A repository for setting up a RNAseq workflow

mindspore

MindSpore is a new open source deep learning training/inference framework that could be used for mobile, edge and cloud scenarios.

GraphSite

GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures

MGV

Supporting code for uncultivated gut virus manuscript

eltetrado

A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures

ipanda

insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis method that aids interpretation of large-scale gene expression data. The method introduced here includes coexpression analysis and gene importance estimation to robustly identify relevant pathways and biomarkers for patient stratification.

DeBreak

Structural variant caller for real-time long-read sequencing data

detectIS

A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data

INSIDER

Detecting foreign inserted DNA segments in the genome

MpGAP

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

haslr

A fast tool for hybrid genome assembly of long and short reads

Nanopore-Workflow

Working pipeline for nanopore + illumina data

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

ExPecto

predicting expression effects of human genome variants ab initio from sequence

HLA

xHLA: Fast and accurate HLA typing from short read sequence data

svcompare

tushare

TuShare is a utility for crawling historical data of China stocks

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

figshare_onekg

Query and download 1000 Genomes gVCF located on figshare