Rocke Dong's repositories
approachingalmost
Approaching (Almost) Any Machine Learning Problem
AutoBioNER
Distantly Supervised Biomedical Named Entity Recognition with Dictionary Expansion: https://ieeexplore.ieee.org/document/8983212
AutoNER
Learning Named Entity Tagger from Domain-Specific Dictionary
AutoPhrase
AutoPhrase: Automated Phrase Mining from Massive Text Corpora
BERT-Relation-Extraction
PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper
Blue-Brain-text-mining-toolbox-for-semantic-search
Blue Brain text mining toolbox for semantic search and structured information extraction
ChemDisGene
Bio relation extraction labeled dataset
chemprop
Message Passing Neural Networks for Molecule Property Prediction
dacite
Simple creation of data classes from dictionaries.
DeepLigand
CNN predicts the mean and variance of the Gaussian distribution, and with ELMo embedding
DSResSol
DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks
GCN-for-Structure-and-Function
Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
imbalanced-regression
[ICML 2021, Long Talk] Delving into Deep Imbalanced Regression
ml-stat-util
Statistical functions based on bootstrapping for computing confidence intervals and p-values comparing machine learning models and human readers
MultiPep
MultiPep stand-alone corpus
nmslib
Non-Metric Space Library (NMSLIB): An efficient similarity search library and a toolkit for evaluation of k-NN methods for generic non-metric spaces.
paper-reading
深度学习经典、新论文逐段精读
ps_mem
A utility to accurately report the in core memory usage for a program
pyahocorasick
Python module (C extension and plain python) implementing Aho-Corasick algorithm
pytorch-lightning-gans
Collection of PyTorch Lightning implementations of Generative Adversarial Network varieties presented in research papers.
RENET2
RENET2: High-Performance Full-text Gene-Disease Relation Extraction with Iterative Training Data Expansion
roformer
Rotary Transformer
transformer-deploy
Efficient, scalable and enterprise-grade CPU/GPU inference server for 🤗 Hugging Face transformer models 🚀