rocke2020

ColabFold

Making Protein folding accessible to all!

cycpeptmp

ChatGLM-6B

ChatGLM-6B: An Open Bilingual Dialogue Language Model | 开源双语对话语言模型

Struct2Graph

A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction

PeptideBERT

Transformer Based Language Model for Peptide Property Prediction

PDGA-MAP4_AP

peptide design

308-Text-to-SQL-Empowered-by-Large-Language-Models-A-Benchmark-Evaluation

NeuroPred-PLM

neuropeptide prediction

biopython.github.io

Source of biopython.org website, migrated from MediaWiki

vllm

A high-throughput and memory-efficient inference and serving engine for LLMs

Megatron-DeepSpeed

Ongoing research training transformer language models at scale, including: BERT & GPT-2

wikiextractor

A tool for extracting plain text from Wikipedia dumps

SimCSE

[EMNLP 2021] SimCSE: Simple Contrastive Learning of Sentence Embeddings https://arxiv.org/abs/2104.08821

materials_discovery

GNN

Firefly

Firefly(流萤): 中文对话式大语言模型(全量微调+QLoRA)，支持微调Aquila2、Baichuan2、CodeLlama、Llma2、Llama、Qwen、Baichuan、ChatGLM2、InternLM、Ziya、Bloom等大模型

Chinese-LLaMA-Alpaca-2

中文LLaMA-2 & Alpaca-2大模型二期项目 + 16K超长上下文模型 (Chinese LLaMA-2 & Alpaca-2 LLMs, including 16K long context models)

llama

Inference code for LLaMA models

Efficient-Tuning-LLMs

Easy and Efficient Finetuning of QLoRA LLMs. (Supported LLama, LLama2, bloom, Baichuan, GLM , Falcon) 大模型高效量化训练+部署.

DeepNeuropePred

DeepNeuropePred：a robust tool to predict cleavage sites in neuropeptide precursors

Firefly-LLaMA2-Chinese

Firefly中文LLaMA-2大模型，支持增量预训练Baichuan2、Llama2、Llama、Falcon、Qwen、Baichuan、InternLM、Bloom等大模型

open_clip

An open source implementation of CLIP.

Chinese-CLIP

Chinese version of CLIP which achieves Chinese cross-modal retrieval and representation generation.

diffusers

🤗 Diffusers: State-of-the-art diffusion models for image and audio generation in PyTorch

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

reinforcement-learning-an-introduction

Python Implementation of Reinforcement Learning: An Introduction

nanoGPT

The simplest, fastest repository for training/finetuning medium-sized GPTs.

BayesianOptimization

A Python implementation of global optimization with gaussian processes.

PyTorch-VAE

A Collection of Variational Autoencoders (VAE) in PyTorch.

Wasserstein-AutoEncoders

PyTorch implementation of Wasserstein Auto-Encoders

wrapt_timeout_decorator

Python Powerful Timeout Decorator that can be used safely on classes, methods, class methods