Rocke Dong's repositories
alignment-handbook
Robust recipes to align language models with human and AI preferences
biopython.github.io
Source of biopython.org website, migrated from MediaWiki
buffer-of-thought-llm
Buffer of Thoughts: Thought-Augmented Reasoning with Large Language Models
buildme
buildme
ChatGLM-6B
ChatGLM-6B: An Open Bilingual Dialogue Language Model | 开源双语对话语言模型
ChatGLM3
ChatGLM3 series: Open Bilingual Chat LLMs | 开源双语对话语言模型
ColabDesign
Making Protein Design accessible to all via Google Colab!
ColabFold
Making Protein folding accessible to all!
DeepSpeedExamples
Example models using DeepSpeed
InternLM
Official release of InternLM2 7B and 20B base and chat models. 200K context support
llama3
The official Meta Llama 3 GitHub site
Megatron-DeepSpeed
Ongoing research training transformer language models at scale, including: BERT & GPT-2
NeuroPred-PLM
neuropeptide prediction
opencompass
OpenCompass is an LLM evaluation platform, supporting a wide range of models (Llama3, Mistral, InternLM2,GPT-4,LLaMa2, Qwen,GLM, Claude, etc) over 100+ datasets.
PDGA-MAP4_AP
peptide design
PeptideBERT
Transformer Based Language Model for Peptide Property Prediction
ProteinMPNN
Code for the ProteinMPNN paper
Qwen
The official repo of Qwen (通义千问) chat & pretrained large language model proposed by Alibaba Cloud.
Qwen1.5
Qwen1.5 is the improved version of Qwen, the large language model series developed by Qwen team, Alibaba Cloud.
RFdiffusion
Code for running RFdiffusion
Struct2Graph
A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
trl
Train transformer language models with reinforcement learning.
vllm
A high-throughput and memory-efficient inference and serving engine for LLMs
weblangchain_chatglm
Retrieval Augmented Generation (RAG) implementation through libraries like Tavily, LangChain, ChatGLM3
wikiextractor
A tool for extracting plain text from Wikipedia dumps