rmnldwg / lymph

Python package for statistical modelling of lymphatic metastatic spread in head & neck cancer.

https://lymph-model.readthedocs.io

rmnldwg/lymph Issues

risk from precomputed state distribution
Closed 3 months ago
loading an empty `DataFrame` raises error
Closed 3 months ago
diagnose matrices not aligned with data
Closed 4 months ago
Synchronization is unreadable and error-prone
Closed 4 months ago
Setting for shared trinary params not accessible via bilateral model
Closed 5 months ago
if things are expensive, they should look expensive
Closed 5 months ago1
matrices not updated in bilateral model
Closed 5 months ago6
Synthetic data generation should output LyProX-style format
Closed 5 months ago
symmetric tumor spread in `bilateral` does not trigger tensor deletion of `_transition_tensor`
Closed 5 months ago11
`nodes` in `graph` not correctly accessed
Closed 5 months ago1
vectorize likelihood
Closed 6 months ago1
trinary model
Closed 6 months ago
unit tests incomplete
Closed 6 months ago2
integration tests missing
Closed 6 months ago2
Plotting
Closed 6 months ago2
Logging
Updated 6 months ago2
use pdoc for docs
Closed 6 months ago1
Allow `Tumor` nodes to have states (aka T-categories) as well
Updated 6 months ago
Issues with `DistributionsUserDict`
Closed 7 months ago
Parameter assignment in bilateral model
Closed 7 months ago5
Wrong product in `comp_posterior_joint_state_dist` function.
Closed 7 months ago2
encoding of diagnose/involvement patterns does not work for trinary
Closed 7 months ago10
fuzzy observations & sublevels
Updated 7 months ago1
Bug in risk comp_posterior_state_dist() in unilateral
Closed 7 months ago2
Bug in comp_diagnose_encoding function of unilateral
Closed 7 months ago1
diagnose time prior updating is not checked
Closed 7 months ago1
make library more modular and reusable
Closed a year ago1
package does not follow separation of concerns
Closed a year ago2
assign spread parameters by keyword
Closed a year ago2
incorporate HPV status
Updated a year ago1
package anatomy
Closed a year ago3
risk crashes when involvement is incomplete
Closed 2 years ago
marginalization over diagnose times
Closed 2 years ago1
double bilateral model
Closed 2 years ago1
improve risk method
Closed 2 years ago1
semantic likelihood
Closed 2 years ago2
switch to `pyproject.toml`
Closed 2 years ago
multiple modalities
Closed 2 years ago1
Graph gets messed up
Closed 2 years ago
Mid-sagittal extension
Closed 2 years ago1
generate data
Closed 2 years ago
Sampler
Closed 2 years ago
display graph nicely
Closed 3 years ago2
use NetworkX library
Closed 3 years ago1
implement __str__ method
Closed 3 years ago
notebook
Closed 3 years ago3
type hinting
Closed 3 years ago
multiple tumours
Closed 3 years ago