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Riz Oic (rizoic)

rizoic

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Riz Oic's starred repositories

hacker-laws

💻📖 Laws, Theories, Principles and Patterns that developers will find useful. #hackerlaws

Language:ShellLicense:CC-BY-SA-4.0Stargazers:25639Issues:444Issues:203

reflex

Run a command when files change

Language:GoLicense:MITStargazers:3316Issues:38Issues:66

TUI-ConsoleLauncher

Linux CLI Launcher for Android

Language:JavaLicense:NOASSERTIONStargazers:1226Issues:141Issues:354

xclip

Command line interface to the X11 clipboard

Language:CLicense:GPL-2.0Stargazers:1022Issues:19Issues:104

posterdown

Use RMarkdown to generate PDF Conference Posters via HTML

Language:HTMLLicense:NOASSERTIONStargazers:836Issues:29Issues:94

An-Introduction-To-Applied-Bioinformatics

Interactive lessons in bioinformatics.

Language:PythonLicense:NOASSERTIONStargazers:775Issues:73Issues:133

scRNAseq-analysis-notes

scRNAseq analysis notes from Ming Tang

License:MITStargazers:605Issues:46Issues:0

circosJS

d3 library to build circular graphs

Language:JavaScriptLicense:MITStargazers:505Issues:28Issues:73

plank

Stupidly simple.

Language:ValaLicense:GPL-3.0Stargazers:411Issues:25Issues:0

acronym

ACRONYM (Acronym CReatiON for You and Me)

Language:PythonLicense:MITStargazers:380Issues:9Issues:12

book

Language:TeXStargazers:319Issues:17Issues:14

HiCPlotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

Language:PythonStargazers:176Issues:15Issues:57

plyranges

A grammar of genomic data transformation

Language:RStargazers:134Issues:14Issues:95

bedtk

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

Language:CLicense:MITStargazers:132Issues:8Issues:1

ega-download-client

A Python-based EGA download client

Language:PythonLicense:Apache-2.0Stargazers:91Issues:10Issues:136

vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.

Language:PerlLicense:MITStargazers:76Issues:17Issues:99

shell-genomics

Introduction to the Command Line for Genomics

License:NOASSERTIONStargazers:60Issues:26Issues:182

bioinfo-tools

Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.

Language:PythonLicense:GPL-3.0Stargazers:49Issues:3Issues:1

bookmark

Simple command line browser independant bookmark utility.

Language:PythonLicense:GPL-3.0Stargazers:45Issues:6Issues:5

awesome-alternative-splicing

Alternative splicing resource

Stargazers:45Issues:4Issues:0

hic-bench

A set of pipelines for Hi-C and ChIP-Seq analysis.

Language:HTMLStargazers:43Issues:15Issues:16

foxy

A simple script that handles bookmarks stored in a txt file.

Language:ShellLicense:MITStargazers:41Issues:3Issues:0

scikit-ribo

Accurate estimation and robust modelling of translation dynamics at codon resolution

Language:PythonLicense:GPL-2.0Stargazers:18Issues:9Issues:8

BUTLRTools

Language:PerlStargazers:15Issues:0Issues:0

GATK

Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

Language:NextflowStargazers:11Issues:4Issues:0

mbm

My Bookmark Manager: manage your bookmarks easily from the bash command line

Language:ShellLicense:NOASSERTIONStargazers:10Issues:5Issues:1

pipeline

Stargazers:6Issues:3Issues:1

RiboSeqPy

Collection of routines for processing Ribo-Seq data.

Language:PythonLicense:MITStargazers:3Issues:0Issues:0

somatic-variant-caller

Somatic variant calling pipeline using Mutect2 adapted from GATK Best Practices

Language:NextflowStargazers:2Issues:0Issues:0

my_appliances

Shell code to create the appliance used for Unix tutorial in roscoff

Language:MakefileStargazers:1Issues:5Issues:0