datacarpentry / shell-genomics

Introduction to the Command Line for Genomics

https://datacarpentry.org/shell-genomics

datacarpentry/shell-genomics Issues

Lacking setup page
Updated 21 days ago
Introducing the shell: The order of the commands
Updated 2 months ago
shell-genomics/05-writing-scripts -incorrect output displayed for $ ls -l bad-reads-script.sh
Closed 3 months ago1
Finish bad sequences calculation
Closed 4 months ago1
Lesson contribution - instructor checkout - Working with files and directories
Closed 8 months ago1
Add discussion of SFTP
Updated 8 months ago1
Transfering local to cloud drop-down menu broken
Closed 8 months ago1
sftp transfer software
Updated 8 months ago13
03-working-with-files permission file images
Closed 9 months ago3
Add a Tip for command line navigation as part of "Naviational Shortcuts" in episode 2
Updated 9 months ago3
Episode 6. Addition of a "cut" command to remove line numbers in history
Updated 9 months ago2
Introducing the Shell - Overview language - local vs remote
Updated 9 months ago1
Introduction to shell: How to exit the shell
Updated 9 months ago1
Addition of a *bin* or *scripts* directory in episode 6. Project organization
Updated 9 months ago1
Legacy Jekyll template `include gh_variables.html` remains in the front page
Closed a year ago
Links need to be fixed in CONTRIBUTING.md
Closed a year ago
Transition To Workbench in May
Closed a year ago10
Typos in Introducing the Shell lesson, How to access the shell section
Closed a year ago1
Inconsistent usage of PuTTY/Git Bash (for Windows users)
Closed a year ago3
A typo in the introduction part
Closed a year ago2
shell-genomics/02-the-filesystem - hidden directory exercise
Updated a year ago1
Grep output doesn't match what's in the lesson in a way that breaks the example
Updated 2 years ago5
Redirection - Adding an example before determining read quality
Updated 2 years ago
"it" is too imprecise in some cases
Closed 3 years ago3
Typo in solution in the Project Organization episode
Closed 3 years ago1
05-writing-scripts - use command line arguments
Closed 3 years ago4
Lesson contribution - instructor checkout – Navigating Files and Directories
Updated 3 years ago4
Lesson contribution - instructor checkout – Navigational shortcuts
Closed 3 years ago3
Error in wc -l output of "Redirecting output" section example ?
Closed 4 years ago9
Typo and confusion in PSCP command
Closed 4 years ago1
Lesson contribution - instructor checkout - rename command
Closed 4 years ago2
Lesson contribution- Combining flags for shell commands- Instructor Checkout
Closed 4 years ago1
Lesson Contribution - Christina Straub
Closed 4 years ago2
Lesson contribution – Removing potentially redundant content - Instructor Checkout
Closed 4 years ago3
Lesson contribution - Redirection
Closed 4 years ago2
MacOS will now default to ssh
Closed 4 years ago2
lesson contribution - submitted by email
Closed 4 years ago4
Adding a few links to resources - background knowledge
Closed 4 years ago1
Nav Files and Dir: reference to root dir with no prior definition
Closed 4 years ago2
Explanation needed for use of # in the shell
Closed 4 years ago2
Introducing the Shell - "man" command
Closed 4 years ago4
Project Organization - Navigating in Nano
Closed 4 years ago2
Suggestion for Adding `cut` to "Writing Scripts and Working with Data"
Closed 4 years ago6
feedback from University of Chicago - submitted by email
Closed 4 years ago2
Introducing 'touch'
Closed 4 years ago2
issue for instructor checkout - submitted by email
Closed 4 years ago3
additional steps
Updated 4 years ago
Add note/tip on hot-key for terminal clearing (contribution for instructor training)
Closed 4 years ago3
topic for the repository
Closed 5 years ago3
touch command and few extra steps
Closed 5 years ago1