2023 Workshop MISSIoN Nanopore Bioinformatics
A practical introduction to long-read bioinformatics for bacterial genome reconstruction in the context of the Kenya MISSIoN project.
Schedule links for the workshop
All events are held at Nordufer, room N01.O2.018
Wednesday, 9 August, 2023
| Time |
Genome Reconstruction I |
| 09:00-10:00 |
Debriefing Day 1 |
| 10:00-10:45 |
De novo Assembly |
| 10:45-11:00 |
Coffee break |
| 11:00-12:00 |
Mapping & Visualization |
| 12:00-13:00 |
Lunch break |
| 13:00-14:30 |
Hands-on & demo |
| 14:30-15:00 |
Coffee break |
| 15:00-15:45 |
Continue practical session |
| 15:45-16:00 |
Wrap-up & questions |
Thursday, 10 August, 2023
| Time |
Genome Reconstruction II & Variant calling |
| 09:00-10:00 |
Debriefing Day 2 |
| 10:00-10:45 |
Assembly polishing |
| 10:45-11:15 |
Coffee break |
| 11:15-12:00 |
Variant calling |
| 12:00-13:00 |
Lunch break |
| 13:00-14:30 |
Hands-on & demo |
| 14:30-15:00 |
Coffee break |
| 15:00-15:45 |
Continue practical session |
| 15:45-16:00 |
Wrap-up & questions |
| Time |
The Rest & Open Questions |
| 09:00-10:00 |
Debriefing Day 3 |
| 10:00-11:00 |
Miscellaneous |
| 11:00-12:00 |
Hands-on & demo |
| 12:00-12:30 |
Wrap-up & questions |
This course material is partly based on the following resources and on contributions from great people: