R Epidemics Consortium (reconhub)

R Epidemics Consortium

reconhub

Geek Repo

Consortium for epidemics analysis and outbreak response using R

Home Page:http://www.repidemicsconsortium.org

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R Epidemics Consortium's repositories

covid19hub

Community-driven COVID-19 analytics in R

incidence

☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence

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learn

RECON learn: a free, open platform for training material on epidemics analysis

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reconhub.github.io

Official website for RECON - The R Epidemics CONsortium

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outbreaker2

Disease outbreak reconstruction from epidemiological and genetic data

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linelist

An R package to import, clean, and store case data

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epiflows

☣:airplane: Risk assessment of travel-related disease spread

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trendbreaker

Analysing epidemic trends using AutoML approaches.

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aweek

Convert dates to arbitrary week definitions :calendar:

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epicontacts

Handling, Visualisation and Analysis of Epidemiological Contacts

projections

Projections of future incidence

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deployer

Self-contained R environment on a thumb drive

earlyR

Estimation of infectiousness in the early stage of an outbreak, with short-term predictions.

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epitrix

Small Helpers and Tricks for Epidemics Analysis

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matchmaker

Dictionary-based cleaning for categorical variables

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nomad

:package::point_right::school_satchel: Pack up R to take away

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report_factories_templates

Templates of report factories

datacomparator

Shiny app for comparing 2 versions of a dataset

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guides

Recon's guidelines for writing statistical analyses reports

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simulacr

Helper functions for outbreak simulation

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occupancy

WIP - Forecast hospital bed occupancy from data on admissions and length of stay

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ESCAIDE_2019_workshop

The website of the R workshops for ESCAIDE 2019

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logo

Logo of the project

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meeting-march-2019

Website for the epi-roadmap meeting in March 2019

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recondrat

RECON drat repo

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