R Epidemics Consortium

docker

Various docker images for RECON

dibbler

Investigation of food-borne disease outbreaks

distcrete

:chart_with_upwards_trend::point_right::bar_chart: Discretise distributions

epimaps

gisfirstaid

A collection of code gists for mapping infectious diseases

recon-helpdesk

Open an issue in this repository if you have general questions about RECON packages

vimes

Visualisation and monitoring of epidemics

argus

Helpers for WHO's Argus

branchr

R Estimation from Cluster Sizes

course-malta-2018

website for RECON short course in Malta 2018

drat

:package::package::package: drat repository

EOIM-Copenhagen

EPIET Outbreak Investigation Module: Copenhagen

msf-sitrep

Sitrep template for MSF

recontools

Tools to develop RECON packages

rubus

talks

Material for RECON talks distributed under CC-BY

contactsim

Simulate Disease Outbreaks with Contacts

course-sofia-2018

website for RECON short course in Sofia 2018

CoxBazaar

Case study dealing with an outbreak of Diphtheria in Cox Bazaar, Bangladesh. Covers: Basic contact tracing, estimates of R/R0, Random Spatial Sampling and Sitrep Generation in Rmarkdown

EOIM-Stegen

EPIET Outbreak Investigation Module: Copenhagen

epimap_doc

Resources for mapping infectious diseases

epirisk

Epidemiological risk calculator for outbreak response

ggpyramid

Age pyramids

hackfest2

Website for the RECON hackfest2

learn-public

Static content for the RECON learn website

meeting-march-2018

Website for the RECON meeting in March 2018

recon-hackfest-3

tracer

Tools for informing contact tracing

workshop-sofia-2018

Materials for our workshop in Sofia, Bulgaria, October 2018

workshopbogota

Webiste for the workshop in Bogota