reconhub / incidence

☣:chart_with_upwards_trend::chart_with_downwards_trend:☣ Compute and visualise incidence

https://reconhub.github.io/incidence

reconhub/incidence Issues

Is it possible to turn an incidence object to a dataframe and use this for plotting?
Closed 2 years ago
The cyprees closes automatically when the files are executed. cypress run
Closed 3 years ago4
Revert #120 for ggplot2 3.3.2
Closed 4 years ago2
`tibble` outputs for `incidence_fit` objects using broom-like `tidy` and `glance` functions
Closed 4 years ago1
plot result incorrect
Closed 4 years ago5
estimate growth rate r using Poisson glm instead of log-linear model
Updated 4 years ago4
incidence supports to fit early epidemic curve with sub-exponential growth?
Updated 4 years ago
"Non-zero exit status"
Updated 4 years ago1
Strange graphical output for simple epicurve
Closed 4 years ago9
strange problem in plotting
Closed 4 years ago2
Forthcoming release of ggplot2 and incidence
Closed 4 years ago
incidence objects will drop groupings with zero days
Updated 4 years ago
Can someone run the numbers against this latest data and publish the projections ?
Closed 4 years ago1
Add option to calculate/plot rolling averages
Updated 4 years ago7
"Count over time" vs "incidence rate"
Updated 4 years ago8
Restructure incidence object as data frame to allow for facetting
Updated 4 years ago11
Add example of using border color to show zero cases
Updated 5 years ago3
Function that returns data.frame
Closed 5 years ago2
Group hierarchies
Closed 5 years ago3
Error in is.finite(x) : default method not implemented for type 'list'
Closed 6 years ago22
Allow for multi-day/week/month intervals
Closed 5 years ago
Add epiweek for interval option
Closed 5 years ago1
Propose not to override `standard` argument while defining a non-NULL `first_date`
Closed 5 years ago6
Error in R 3.6.0 due to `sample()`
Closed 5 years ago
Show demo in plot customisation vignette on updating number of breaks
Updated 5 years ago
Travis no longer uploading test results
Closed 5 years ago1
problems with plotting POSIXt incidence + fit objects
Closed 5 years ago8
re-create vdiffr tests for vdiffr version 0.3.0
Closed 5 years ago
stegen not converting dates
Closed 5 years ago1
Tests randomly failing for cached objects
Closed 5 years ago2
Fitting log-linear model to incidence curve gives different results for Date and POSIXct inputs to incidence()
Closed 5 years ago
r estimates from fit() are different when same data are estimated separately or as groups
Updated 5 years ago1
Add the possibility to add extra information on special dates
Updated 6 years ago1
scale_fill_manual() drains incidence curves of their color when groups not present
Closed 6 years ago28
Warn if (max(date) - min(date)) > 50 years?
Closed 6 years ago1
give a better error when subsetting groups that don't exist
Closed 6 years ago
Request feature: I want more coffee
Closed 6 years ago3
incidence initializer does not respect factor levels for groups
Closed 6 years ago
plot.incidence does not take column order into account
Closed 6 years ago
Add support for plotting surveillance algorithms
Updated 6 years ago1
Error using first_date and group at the same time
Closed 6 years ago2
flexible position of tickmarks on x-axis
Updated 6 years ago
Allow peak estimation across groups
Updated 6 years ago
estimate_peak fails for non-date incidence
Closed 6 years ago
Submit to CRAN
Closed 6 years ago1
Ensure fit.incidence works with intervals set as character strings
Closed 6 years ago1
Set all character string interval bins to start of interval
Closed 6 years ago
Add accessors
Closed 6 years ago
rename option `iso_weeks` to `iso`
Closed 6 years ago8
add first_date to options for incidence
Closed 6 years ago