Giters
Russell Dinnage (rdinnager)

rdinnager

Geek Repo

48

followers

103

following

548

stars

Company:Florida International University

Location:United States

Home Page:www.mepheo.science

Twitter:@ecologician

Github PK Tool:Github PK Tool

Russell Dinnage's repositories

impac

R package to create packed image mosaics (inspired by https://github.com/qnzhou/Mosaic)

Language:RLicense:NOASSERTIONStargazers:14Issues:3Issues:10

slimr

Run and Analyse SLiM Population Genetics Forward Simulations from R.

Language:RLicense:NOASSERTIONStargazers:7Issues:4Issues:43

fibre

Flexible scalable phylogenetic trait models using integrated nested laplace approximation (INLA)

Language:RLicense:NOASSERTIONStargazers:3Issues:3Issues:3

deepbills

Project to analyse 3d bird bill morphology using deep learning

Language:RLicense:MITStargazers:1Issues:3Issues:0

grambank_vae

Code for running variational autoencoders on grambank data for ancestral character estimation.

Language:RLicense:MITStargazers:1Issues:4Issues:0

phyf

Tibble subclass and vctrs based phylogenetic data format to support phylogenetic modelling in {fibre}, inspired by {sf}

Language:RLicense:NOASSERTIONStargazers:1Issues:2Issues:10

bioclim_intrinsic_dimension

Code to analyse the intrinsic dimension of the global Bioclim dataset

Language:RLicense:MITStargazers:0Issues:0Issues:0

biocman

R package with bioclimatic manifold data

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

causal_PCM

Code related to causal phylogenetic comparative methods paper

Stargazers:0Issues:0Issues:0

cjs_webr

webr coding demonstration about CJS HMM models

Language:JavaScriptStargazers:0Issues:0Issues:0

dagnn

Minimal R package for creating custom neural network architectures easily using {torch}

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

dgsdm-prelim

Code for some prelimary exploration of the idea of Deep Generative Species Distribution Models (DGSDM)

Stargazers:0Issues:2Issues:0

diffusion-SDM

Code and notes for new mega-project: Denoising Diffusion models for Species Distribution Modeling

Language:RLicense:MITStargazers:0Issues:0Issues:0

fibre_demo

Code highlighting the use of the fibre package for phylogenetic trait modeling. Examples for manuscript 'Reimagining phylogenetic comparative methods for the era of big data'

Language:RLicense:MITStargazers:0Issues:2Issues:0

genAISDM

Code for modeling tetrapod distributions jointly via generative AI

Language:RStargazers:0Issues:0Issues:0

MINGW-packages

Package scripts for MinGW-w64 targets to build under MSYS2.

Language:ShellLicense:BSD-3-ClauseStargazers:0Issues:2Issues:0

miniphylopic

R package containing the phylopic_mini dataset, an MNIST-like dataset of organism silhouettes with associated taxonomic heirarchy

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

pangenome_sim

Code for simulating evolution of pangenomes in bacterial population using SLiM

Stargazers:0Issues:0Issues:0

phenobase

Classifiers for the Phenobase project

License:MITStargazers:0Issues:0Issues:0

phenovision

Code for classifying phenology from plant images using deep learning computer vision models.

Language:RStargazers:0Issues:0Issues:0

phylo_dim_blessing

Code exploring the 'blessing of dimensionality' in phylogenetic trait evolution models

Stargazers:0Issues:0Issues:0

rdinnager.r-universe.dev

R-universe repo

Stargazers:0Issues:3Issues:1

SDM_datasets

A list of datasets suitable for large-scale Species Distribution Model benchmarking

Stargazers:0Issues:0Issues:0

sdmpack

R package for SDM course

Language:HTMLStargazers:0Issues:2Issues:0

SLiM

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.

Language:C++License:GPL-3.0Stargazers:0Issues:2Issues:0

slimr_blog

Source for blog about slimr R package

Language:JavaScriptStargazers:0Issues:2Issues:0

slimr_manuscript

Rmarkdown manuscript describing rslim package

Language:HTMLStargazers:0Issues:0Issues:0

tidysdm

tidymodels framework for species distribution models

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0

torch

R Interface to Torch

Language:C++License:NOASSERTIONStargazers:0Issues:0Issues:0

torchvision

R interface to torchvision

Language:RLicense:NOASSERTIONStargazers:0Issues:0Issues:0