Russell Dinnage's repositories
grambank_vae
Code for running variational autoencoders on grambank data for ancestral character estimation.
bioclim_intrinsic_dimension
Code to analyse the intrinsic dimension of the global Bioclim dataset
causal_PCM
Code related to causal phylogenetic comparative methods paper
dgsdm-prelim
Code for some prelimary exploration of the idea of Deep Generative Species Distribution Models (DGSDM)
diffusion-SDM
Code and notes for new mega-project: Denoising Diffusion models for Species Distribution Modeling
fibre_demo
Code highlighting the use of the fibre package for phylogenetic trait modeling. Examples for manuscript 'Reimagining phylogenetic comparative methods for the era of big data'
genAISDM
Code for modeling tetrapod distributions jointly via generative AI
MINGW-packages
Package scripts for MinGW-w64 targets to build under MSYS2.
miniphylopic
R package containing the phylopic_mini dataset, an MNIST-like dataset of organism silhouettes with associated taxonomic heirarchy
pangenome_sim
Code for simulating evolution of pangenomes in bacterial population using SLiM
phenobase
Classifiers for the Phenobase project
phenobase_website
Website of the Phenobase project
phylo_dim_blessing
Code exploring the 'blessing of dimensionality' in phylogenetic trait evolution models
rdinnager.r-universe.dev
R-universe repo
SDM_datasets
A list of datasets suitable for large-scale Species Distribution Model benchmarking
slimr_blog
Source for blog about slimr R package
slimr_manuscript
Rmarkdown manuscript describing rslim package
torchvision
R interface to torchvision