rdinnager

nichefillr

R package implementing niche filling simulations

proteaceae_deep_learning

Code for playing around with and learning deep learning methods using images of Proteaceae from Australia

AD-tests

Code to test different methods of Automatic Differentiation for solving traits evolution ODEs

afd

new version of afd analysis using docker

brms

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

brms_greta

Code to run brms style formula interface with Greta as backend instead of STAN

contextr

Lightweight R package for making contextual analysis easier

dartR

Importing and Analysing DArT type snp and silicodart data

DDLL

Dinnage Deep Learning Library (personal library of DL related functions)

deSolve_nimble_test

Testing ways to effectively integrate deSolve and nimble packages in R

diversitree

diversitree: comparative phylogenetic analyses of diversification

ESA2018_poster_talk

Code to generate results for ESA2018 (Ecological Society of Australia) poster and lightning talk

GenCovINLA

General Covariance Modeling with INLA.

gummm

Generally useful mishmash modelling

hues

Generate palettes of distinct colours through k means clustering of LAB colour space.

JSDM-NMF-TEFE

Code for running a massive Joint Species Distribution Model using Non-negative Matrix Factorization and a Trait-Environment Feature Encoder (using Tensorflow)

locator

deep learning prediction of geographic location from individual genome sequences

modeldescribr

R package with functions used to describe and visualize underlying models from various model objects

pez

Phylogenetics for the Environmental Sciences

phurl

Phylogenetic modelling Using Regularized Linear models

phylo-nimble-test

Code to begin implementing phylogenetic models in nimble

phylocompetition

Modelling presence/absence data of multiple species, incorporating environment and pairwise competition including phylogenetic structure.

phylogeny_GAN

Code to run a generative adversarial network to generate phylogeny images.

phylomap

R package for phylogenetic stochastic mapping, including a new method that bypasses matrix exponentiation

phyr_ms

Manuscript for phyr

PPDiversify

Code to fit phylogenetic diversification models using a point process along branches

readium

Readium 2.0 - A medium-like Ghost theme.

Rvcg

R-package providing mesh manipulation routines from VCGLIB

sim_model_efficiency

Testing different way to make simple but slow simulations run faster in R

Tapestree.jl