Ray Fu's repositories
zooma
Godot example of recreating the classic zuma
website
For personal website
spatialshiny_adr
Adrenal Gland Spatial Transcriptomics Atlas
color_repel
Repel visually similar colors away for colorblind users in various plots
hashER
non-optimal scenarios benchmarking of sc(n/multiome)RNA-seq hashing demultiplex tools
bc_umi_gen
Generate random fastqs with designated barcode and unique molecular identifier structure
indelfindR
finding possible combinations of indel alleles from inhomogenous sanger sequencing results
STAR
RNA-seq aligner
configs
Config files used to define parameters specific to compute environments at different Institutions
rbiorxiv
R client for the bioRxiv API (https://api.biorxiv.org/)
slate
Slate is a Jekyll theme for GitHub Pages
practical-data-analysis
Practical Biological Data Analysis
RClusterCT
An R Package to cluster cell types from readcounts
cellar
scRNA-Seq pipelines and analysis vignettes
valr
Genome Interval Arithmetic in R
MarcLaidlaw-Epistle3
Just being archived for posterity.
seq-for100mats
command lines and scripts for converting between formats required by various RNA-seq software packages
TailRead
analyzing large number of short sequencing reads for nontemplated nucleotide additions
shorts
collection of short scripts
tcgaAPP
working with TCGA data to direct investigation of genes
mrjob
Run MapReduce jobs on Hadoop or Amazon Web Services
FlaskDemoRF
trying out Flask
biom262-2017
Code and notebooks for BIOM262 — 2017
homeworks
various random scripts done for homework
Hot-Cold-Hand
pulling data from NBA API, and exploring player performance after a made or missed shot