raysinensis

scKIM

Light-weight static HTML browser solution for scRNA-seq and spatial transcriptomics

color_repel

Repel visually similar colors away for colorblind users in various plots

SCoreRust

Single Cell Pathway Scoring powered by Rust

bc_umi_gen

Generate random fastqs with designated barcode and unique molecular identifier structure

biom262-2017

Code and notebooks for BIOM262 — 2017

cellar

scRNA-Seq pipelines and analysis vignettes

clone_counts_public

configs

Config files used to define parameters specific to compute environments at different Institutions

cv

FlaskDemoRF

trying out Flask

hashER

non-optimal scenarios benchmarking of sc(n/multiome)RNA-seq hashing demultiplex tools

homeworks

various random scripts done for homework

Hot-Cold-Hand

pulling data from NBA API, and exploring player performance after a made or missed shot

indelfindR

finding possible combinations of indel alleles from inhomogenous sanger sequencing results

MarcLaidlaw-Epistle3

Just being archived for posterity.

mrjob

Run MapReduce jobs on Hadoop or Amazon Web Services

practical-data-analysis

Practical Biological Data Analysis

rbiorxiv

R client for the bioRxiv API (https://api.biorxiv.org/)

RClusterCT

An R Package to cluster cell types from readcounts

seq-for100mats

command lines and scripts for converting between formats required by various RNA-seq software packages

shorts

collection of short scripts

slate

Slate is a Jekyll theme for GitHub Pages

spatialshiny_adr

Adrenal Gland Spatial Transcriptomics Atlas

STAR

RNA-seq aligner

stellar

TailRead

analyzing large number of short sequencing reads for nontemplated nucleotide additions

tcgaAPP

working with TCGA data to direct investigation of genes

valr

Genome Interval Arithmetic in R

website

For personal website

zooma

Godot example of recreating the classic zuma