rargelaguet

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Altos Labs (https://altoslabs.com/)

Cambridge, UK

https://rargelaguet.github.io/

Ricard Argelaguet's starred repositories

bat

A cat(1) clone with wings.

Language:RustApache-2.048527 202 1402

pyro

Deep universal probabilistic programming with Python and PyTorch

Language:PythonApache-2.08488 201 1073

dust

A more intuitive version of du in rust

Language:RustApache-2.08474 34 190

addict

The Python Dict that's better than heroin.

Language:PythonMIT2461 57 80

choose

A human-friendly and fast alternative to cut and (sometimes) awk

Language:RustGPL-3.01799 17 38

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

Language:PythonBSD-3-Clause1195 25 1014

dfply

dplyr-style piping operations for pandas dataframes

Language:PythonGPL-3.0889 40 68

ggiraph

make 'ggplot' graphics interactive

Language:R771 22 253

manubot

Python utilities for Manubot: Manuscripts, open and automated

Language:PythonNOASSERTION425 16 149

enformer-pytorch

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Language:PythonMIT414 17 36

ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

Language:RMIT371 15 1071

GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

Language:PythonMIT362 7 121

dance

DANCE: a deep learning library and benchmark platform for single-cell analysis

Language:PythonBSD-2-Clause344 7 42

cellrank

CellRank: dynamics from multi-view single-cell data

Language:PythonBSD-3-Clause338 9 706

SUPPA

SUPPA: Fast quantification of splicing and differential splicing

Language:PythonMIT253 14 176

Palantir

Single cell trajectory detection

Language:Jupyter NotebookGPL-2.0210 10 121

muon

muon is a multimodal omics Python framework

Language:PythonBSD-3-Clause208 14 107

ShinyCell

Shiny Interactive Web Apps for Single-Cell Data

Language:RGPL-3.0148 9 79

SEACells

SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

Language:Jupyter NotebookGPL-2.0141 7 57

MPAL-Single-Cell-2019

Publication Page for MPAL Paper 2019

Language:R76 13 25

ggdogs

The geom you always wished for adding dogs to ggplot2

Language:RGPL-3.037 2 1

asap_reproducibility

Reproducing all analyses and figures for the ASAP-seq paper

Language:Jupyter Notebook29 2 7

PerturbNet

PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

Language:PythonGPL-3.028 2 4

velorama

Gene regulatory network inference for RNA velocity and pseudotime data

Language:PythonMIT22 2 6

Deep-Learning-DNA-Sequences

Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural network architectures (CNN, LSTM, Attention).

Language:PythonMIT19 50

blockchain-a-z

Notes and implementations of a blockhain, a cryptocurrency and a smart contract. The contents follow the course Blockchain A-Z by SuperDataScience in Udemy.

Language:Jupyter NotebookMIT900

stoeger_et_al_2022_transcriptome_imbalance

Code accompanying manuscript

Language:Jupyter Notebook6 50

Cellular_Lifespan_Study

A repository of code for data processing and analysis of data generated for the Cellular Lifespan Study performed at the Mitochondrial Psychiobiolgy Lab at Columbia University Medical Center

Language:HTMLGPL-3.04 1 1

EmbryoTimecourseShiny

Shiny scripts for the embryo timecourse dataset

Language:R4 40

bs-ATLAS-seq

bs-ATLAS-seq analysis scripts

Language:ShellGPL-3.01 10