Ricard Argelaguet's starred repositories
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
enformer-pytorch
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
asap_reproducibility
Reproducing all analyses and figures for the ASAP-seq paper
PerturbNet
PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
Deep-Learning-DNA-Sequences
Deep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural network architectures (CNN, LSTM, Attention).
blockchain-a-z
Notes and implementations of a blockhain, a cryptocurrency and a smart contract. The contents follow the course Blockchain A-Z by SuperDataScience in Udemy.
stoeger_et_al_2022_transcriptome_imbalance
Code accompanying manuscript
Cellular_Lifespan_Study
A repository of code for data processing and analysis of data generated for the Cellular Lifespan Study performed at the Mitochondrial Psychiobiolgy Lab at Columbia University Medical Center
EmbryoTimecourseShiny
Shiny scripts for the embryo timecourse dataset
bs-ATLAS-seq
bs-ATLAS-seq analysis scripts