GreenleafLab / MPAL-Single-Cell-2019

Publication Page for MPAL Paper 2019

GreenleafLab/MPAL-Single-Cell-2019 Issues

Runtime of getting UMAP reductions
Updated a year ago4
Cell barcode IDs for processed ATAC SummarizedExperiment objects
Updated 3 years ago
scRNA cell type annotation marker
Updated 3 years ago
Label transfer from RNA to ATAC
Updated 3 years ago
Antibody features in raw 10x Bam Files provided in the repository link
Updated 4 years ago
Where is the bam file for scATAC-seq data?
Updated 4 years ago6
Code for creating differentiual_Summary objects is missing
Updated 4 years ago1
Cannot find the definition of the function "keepFilteredChromosomes"
Updated 4 years ago
Error in lsiProjection
Updated 4 years ago
nn_index in scRNA-Projection-UMAP.zip is empty or not compatible with uwot 0.1.8 and RcppAnnoy 0.0.16
Updated 4 years ago
About the reference genome used in scRNA
Updated 4 years ago
LASSO penalty issue in customized gene activity score calculation
Updated 4 years ago
Seurat v3
Closed 5 years ago2
How did you compose those pretty scentific figures ?
Updated 4 years ago4
'keepFilteredChromosomes' function seems invalid
Closed 4 years ago2
Where is the genes.gtf file
Closed 4 years ago1
CLR assay missing in scADT-All-Hematopoiesis-MPAL-191120.rds
Updated 4 years ago1
sparseMatTTest function is not defined in the scATAC_05_Cluster_Disease_w_Reference_v1.R ?
Closed 4 years ago1
optimizeLSI for scRNA-seq gives Error in if (n < 0L) max(length(x) + n, 0L) else min(n, length(x)) :
Updated 5 years ago
error in 02.R...
Closed 5 years ago3
is there a way to combine different 10x results ie different fragment.tsv.gz? thanks!
Closed 5 years ago2
AML cells LSI projection and reclassification
Updated 5 years ago2
No seuratSNN function?
Closed 5 years ago1
Download link does not match with the description
Closed 5 years ago1
scATAC peak file
Closed 5 years ago2