rargelaguet

scnmt_gastrulation

scNMT-seq gastrulation

mouse_organogenesis_10x_multiome_publication

Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""

thesis

University of Cambridge PhD thesis

mofa_training

MOFA training resources

scNMT-seq

single-cell Nucleosome Methylation Transcription

10x_gastrulation_DNMTs

Dnmt3a, Dnmt3b, Dnmt1 KO scRNA-seq mouse early organogenesis

scnmt_eb

single-cell multi-omics study of embryoid body differentiation

betabinomial_simulations

DUX4_8CLC_hESCs

DUX4_ hESCs_multiome

EMBO-multi-omics-course

pyro_tests

Pyro (probabilistic PyTorch) tests

shiny_multiome_organogenesis

R Shiny app for the 10x Multiome mouse organogenesis project

single_cell_training

Training material for single-cell analysis

test_stan

Testing Stan MCMC and Variational Bayes capabilities

10x_gastrulation_TetChimera

10x_gastrulation_TetChimera

scnmt_gastrulation_TetChimera

scNMT-seq from Tet TKO chimeras

autoconsum_catalunya

Anàlisi de dades sobre l'autoconsum energètic a Catalunya

funcompbio.github.io

gastrulation10x

Guo2017_preimplantation

COOL-seq Guo2017

MSC_UPF_multiomics

Slides and vignette for the Data Integration lecture at Universitat Pompeu Fabra (May 2020)

MSC_UPF_singlecell

Single-cell data analysis: MSc Bioinformatics UPF

rargelaguet.github.io

Hugo Academic Theme

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

shiny_dnmt

Shiny app for the DNMT and TET KO cellular atlas

shiny_rna_embryogenesis

R Shiny app to visualise gene expression during embryogenesis

try-manubot

A repository to practice contributing to a Manubot manuscript

Wang2021_mouse_preimplantation

Analysis of Wang2021 mouse preimplantation scNOMeRe-seq data

whitePaper

Manubot for white paper