raphaelvallat / conn_tools

Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox

conn_tools

Some tools born from practical needs during the analysis of ROI-to-ROI functional connectivity using the excellent CONN Toolbox.

1) Extract and plot brain networks connectivity matrix

Automatize the extraction and plotting of brain networks connectivity matrix from CONN results folder, using either Matlab or Python

Script:

MATLAB

extract_correl_mat.m

plot_correl_mat.m

Python

conn_correl_mat.py

2) Plot BOLD denoised timeseries of a pair of ROIs and compute the correlation coefficient

Script:

conn_plot_ts.m

Tutorial & Examples

Please go on my website for some tutorials about these functions