RabadanLab

arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq

randomly

A Library for Denoising Single-Cell Data with Random Matrix Theory

Pegasus

Annotation and Prediction of Oncogenic Gene Fusions in RNAseq

scTDA

An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data

TOBI

TOBI predicts somatic variants from .vcf or .bam input

Bootstrap-Analysis-Arriaga-Nature-Cancer-2020

Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)

mage-pipeline

MAGE - Multilevel Analysis of Gene Expression

MITKats

The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.

pamler

sakmapper

Implementation of Mapper Algorithm

Chek2_scRNAseq

The script used in manuscript "Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade" for scRNAseq data analysis.

EvoMod

Evolutionary Moduli space visualization and statistics

GBMsinglecell

INDEL-seq

Scripts used for INDEL-seq data processing

dockersavi

Dockerfolder for Docker-ized version of SAVI

ES

mutcomfocal

NORI

NORI (Non-coding RNA Identification), a computational tool to identify lncRNAs using next generation sequencing.

Pandora

Microbial Signatures in Human RNAseq Data

PH_recombination_virus

Pipeline to infer recombination rates

pitp

proscope

RabadanLab.github.io

randomlypage

Webpage for randomly package

randomlysite

randomlyView

Smoother

A Unified and Modular Framework to Incorporate Structural Dependency in Spatial Omics Data

spatial_dipg

TARGet

Topological inference of horizontal evolution from multiple sequence alignments

ViromeOfManhattan