RabadanLab's repositories
Pandora
Microbial Signatures in Human RNAseq Data
Smoother
A Unified and Modular Framework to Incorporate Structural Dependency in Spatial Omics Data
INDEL-seq
Scripts used for INDEL-seq data processing
randomlypage
Webpage for randomly package
Chek2_scRNAseq
The script used in manuscript "Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade" for scRNAseq data analysis.
PH_recombination_virus
Pipeline to infer recombination rates
Bootstrap-Analysis-Arriaga-Nature-Cancer-2020
Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)
dockersavi
Dockerfolder for Docker-ized version of SAVI
mage-pipeline
MAGE - Multilevel Analysis of Gene Expression
NORI
NORI (Non-coding RNA Identification), a computational tool to identify lncRNAs using next generation sequencing.
EvoMod
Evolutionary Moduli space visualization and statistics
TARGet
Topological inference of horizontal evolution from multiple sequence alignments