pscedu / singularity-star

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Home Page:https://github.com/alexdobin/STAR

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singularity-star

Singularity recipe for star.

Installing the container on Bridges 2

Copy the

  • SIF file
  • and the STAR script

to /opt/packages/star/2.7.6a.

Copy the file modulefile.lua to /opt/modulefiles/star as 2.7.6a.lua.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

To run tests

To run the available tests, run the command

bash ./test.sh

Copyright © 2020-2021 Pittsburgh Supercomputing Center. All Rights Reserved.

The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.

About

Spliced Transcripts Alignment to a Reference.

https://github.com/alexdobin/STAR

License:Apache License 2.0


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Language:Lua 45.1%Language:Shell 41.0%Language:Singularity 13.9%